Variant report

Variant	nsv518915
Chromosome Location	chr3:160723364-160724933
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:60 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9832109	chr3:160723364-160723365	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs144611420	chr3:160723372-160723373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs370823989	chr3:160723382-160723383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs9812507	chr3:160723393-160723394	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs376328503	chr3:160723428-160723429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs536058731	chr3:160723448-160723449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs544731917	chr3:160723449-160723450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs147231326	chr3:160723450-160723451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs533603499	chr3:160723544-160723545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs111799373	chr3:160723595-160723596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs560429119	chr3:160723602-160723603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs370084877	chr3:160723620-160723621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs529507231	chr3:160723690-160723691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs185943615	chr3:160723723-160723724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs529965492	chr3:160723733-160723734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs147938515	chr3:160723769-160723770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs190608768	chr3:160723770-160723771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs530416595	chr3:160723781-160723782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs550677856	chr3:160723848-160723849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs560246433	chr3:160723917-160723918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs570421300	chr3:160723926-160723927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs75083867	chr3:160723933-160723934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs778662	chr3:160723941-160723942	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs372149425	chr3:160723953-160723954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs183636182	chr3:160724009-160724010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs535794829	chr3:160724066-160724067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs187289408	chr3:160724075-160724076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs115889768	chr3:160724090-160724091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs192006188	chr3:160724189-160724190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs35886507	chr3:160724190-160724191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs140588041	chr3:160724211-160724212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs540833350	chr3:160724217-160724218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs558774099	chr3:160724311-160724312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs560268685	chr3:160724326-160724327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs182691387	chr3:160724395-160724396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs543270717	chr3:160724444-160724445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs562818873	chr3:160724456-160724457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs530546922	chr3:160724460-160724461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs367908960	chr3:160724511-160724512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs778663	chr3:160724565-160724566	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs570533528	chr3:160724619-160724620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs201126812	chr3:160724620-160724621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs532841953	chr3:160724624-160724625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs546713923	chr3:160724627-160724628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs566711949	chr3:160724628-160724629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs535629430	chr3:160724660-160724661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs571703318	chr3:160724691-160724692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs555728343	chr3:160724692-160724693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs145575168	chr3:160724706-160724707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs368259846	chr3:160724742-160724743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	16608533	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Breast cancer	21364760	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	21785460	CNVD
Bladder cancer	21909424	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	21811512	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Sudden cardiac death	19188705	CNVD
Mantle cell lymphoma	19029149	CNVD
Malformation	19546859	CNVD
Schizophrenia	19546859	CNVD
Breast cancer	17133270	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160721400-160724800	Weak transcription	Brain Anterior Caudate	brain
2	chr3:160724800-160726400	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links