Variant report

Variant	rs778663
Chromosome Location	chr3:160724565-160724566
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1037888	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10513559	0.88[EUR][1000 genomes]
rs10513562	0.94[EUR][1000 genomes]
rs11708076	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13064176	0.84[EUR][1000 genomes]
rs13066683	0.81[AMR][1000 genomes]
rs13073571	0.88[EUR][1000 genomes]
rs13089559	0.84[EUR][1000 genomes]
rs13097130	0.88[EUR][1000 genomes]
rs13098884	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1599386	0.81[AMR][1000 genomes]
rs17236746	0.82[EUR][1000 genomes]
rs17826438	0.83[EUR][1000 genomes]
rs2306061	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2593812	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34168351	0.86[EUR][1000 genomes]
rs4616689	0.81[AMR][1000 genomes]
rs4679671	0.94[EUR][1000 genomes]
rs4679922	0.83[EUR][1000 genomes]
rs4679924	0.83[EUR][1000 genomes]
rs4679926	0.89[EUR][1000 genomes]
rs5004752	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55672403	0.95[EUR][1000 genomes]
rs55888276	0.84[EUR][1000 genomes]
rs61105146	0.83[EUR][1000 genomes]
rs62280303	0.83[EUR][1000 genomes]
rs62280331	0.94[EUR][1000 genomes]
rs62280333	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6441348	0.84[EUR][1000 genomes]
rs6769642	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6772578	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6774635	0.81[AMR][1000 genomes]
rs6786871	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6804650	0.83[EUR][1000 genomes]
rs6806054	0.97[EUR][1000 genomes]
rs723757	0.83[EUR][1000 genomes]
rs7619011	0.81[AMR][1000 genomes]
rs7622047	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7628880	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7630674	0.81[AMR][1000 genomes]
rs7632423	0.93[EUR][1000 genomes]
rs7650703	0.81[AMR][1000 genomes]
rs778642	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs778643	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs778645	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs778646	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs778648	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs778649	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs778653	0.97[EUR][1000 genomes]
rs778654	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs778657	0.97[EUR][1000 genomes]
rs796609	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs898680	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs898681	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9290065	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs980975	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs980976	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9811594	0.94[EUR][1000 genomes]
rs9847866	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9848239	0.81[AMR][1000 genomes]
rs9860360	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9875200	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv518915	chr3:160723364-160724933	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160721400-160724800	Weak transcription	Brain Anterior Caudate	brain

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