Variant report

Variant	rs778645
Chromosome Location	chr3:160707459-160707460
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1037888	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10513559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs10513562	0.96[EUR][1000 genomes]
rs11708076	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11713192	1.00[CHB][hapmap]
rs11716265	1.00[JPT][hapmap]
rs13064176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs13073571	0.90[EUR][1000 genomes]
rs13089559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs13092102	1.00[JPT][hapmap]
rs13097130	0.90[EUR][1000 genomes]
rs13098884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1599374	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1599386	0.80[ASN][1000 genomes]
rs17236746	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs17826438	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2121718	1.00[JPT][hapmap]
rs2306061	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2593812	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34168351	0.89[EUR][1000 genomes]
rs4616689	0.80[ASN][1000 genomes]
rs4679671	0.96[EUR][1000 genomes]
rs4679922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4679924	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs4679926	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs5004752	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55672403	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55888276	0.87[EUR][1000 genomes]
rs61105146	0.86[EUR][1000 genomes]
rs62280303	0.86[EUR][1000 genomes]
rs62280331	0.97[EUR][1000 genomes]
rs62280333	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6441348	0.85[EUR][1000 genomes]
rs6764019	1.00[JPT][hapmap]
rs6769642	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6772578	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6774635	0.80[ASN][1000 genomes]
rs6786871	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6799160	1.00[JPT][hapmap]
rs6804650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs6806054	0.99[EUR][1000 genomes]
rs723757	0.85[EUR][1000 genomes]
rs7622047	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7628880	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7632423	0.95[EUR][1000 genomes]
rs778642	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778643	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778646	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778648	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778649	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778653	0.99[EUR][1000 genomes]
rs778654	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778657	0.99[EUR][1000 genomes]
rs778663	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs796609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs898680	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs898681	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9290065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9790132	1.00[JPT][hapmap]
rs980975	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs980976	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9811594	0.96[EUR][1000 genomes]
rs9831488	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs9847866	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9848239	0.80[ASN][1000 genomes]
rs9860360	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9875200	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1007004	chr3:160695108-160718154	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160697200-160710600	Weak transcription	Left Ventricle	heart
2	chr3:160704200-160708600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:160705000-160720000	Weak transcription	Gastric	stomach
4	chr3:160706000-160711200	Weak transcription	Right Atrium	heart
5	chr3:160706400-160716000	Weak transcription	Primary T cells from cord blood	blood
6	chr3:160707200-160708200	Enhancers	Placenta	Placenta
7	chr3:160707400-160707600	Enhancers	Esophagus	oesophagus
8	chr3:160707400-160708800	Enhancers	Fetal Stomach	stomach

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