Variant report

Variant	rs13097130
Chromosome Location	chr3:160669279-160669280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160659734..160663014-chr3:160666194..160669867,3	K562	blood:
2	chr3:160666317..160670196-chr3:160671077..160673874,3	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10513559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513562	0.86[EUR][1000 genomes]
rs11708076	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12639128	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13064176	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073571	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086250	0.83[EUR][1000 genomes]
rs13089559	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098884	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1374793	0.87[EUR][1000 genomes]
rs17236725	0.85[EUR][1000 genomes]
rs17236746	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17826438	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1839021	0.80[EUR][1000 genomes]
rs2593812	0.90[EUR][1000 genomes]
rs34168351	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34297047	0.83[EUR][1000 genomes]
rs4679666	0.82[EUR][1000 genomes]
rs4679671	0.86[EUR][1000 genomes]
rs4679922	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679924	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679926	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5004752	0.87[EUR][1000 genomes]
rs55672403	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55888276	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61105146	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280303	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280331	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62280333	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6764019	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6786871	0.84[EUR][1000 genomes]
rs6796201	0.83[EUR][1000 genomes]
rs6799160	0.83[EUR][1000 genomes]
rs6804650	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806054	0.89[EUR][1000 genomes]
rs6809177	0.83[EUR][1000 genomes]
rs723757	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628880	0.86[EUR][1000 genomes]
rs7632423	0.85[EUR][1000 genomes]
rs778642	0.90[EUR][1000 genomes]
rs778643	0.90[EUR][1000 genomes]
rs778645	0.90[EUR][1000 genomes]
rs778646	0.90[EUR][1000 genomes]
rs778648	0.84[EUR][1000 genomes]
rs778649	0.90[EUR][1000 genomes]
rs778653	0.89[EUR][1000 genomes]
rs778654	0.90[EUR][1000 genomes]
rs778657	0.89[EUR][1000 genomes]
rs778663	0.88[EUR][1000 genomes]
rs796609	0.90[EUR][1000 genomes]
rs9790132	0.81[EUR][1000 genomes]
rs9811594	0.86[EUR][1000 genomes]
rs9847866	0.82[EUR][1000 genomes]
rs9860360	0.87[EUR][1000 genomes]
rs9875200	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160666400-160669400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:160666400-160669600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:160666400-160669600	Weak transcription	Left Ventricle	heart
4	chr3:160666400-160673400	Weak transcription	Right Atrium	heart
5	chr3:160667400-160696000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:160668200-160670400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr3:160668600-160669800	Weak transcription	Pancreas	Pancrea
8	chr3:160668600-160669800	Weak transcription	Psoas Muscle	Psoas
9	chr3:160668600-160670000	Weak transcription	Gastric	stomach
10	chr3:160668800-160669400	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr3:160669000-160669800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:160669000-160670600	Enhancers	Fetal Brain Male	brain
13	chr3:160669000-160672400	Enhancers	Fetal Brain Female	brain
14	chr3:160669200-160669600	Enhancers	Colon Smooth Muscle	Colon
15	chr3:160669200-160670800	Enhancers	Fetal Kidney	kidney

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