Variant report

Variant	rs9790132
Chromosome Location	chr3:160627289-160627290
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1037888	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs10513559	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs10513562	0.96[CEU][hapmap]
rs11708813	0.96[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11716265	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11922752	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11924510	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12639128	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs13064176	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13071909	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13073571	0.81[EUR][1000 genomes]
rs13086250	0.96[CEU][hapmap];0.87[GIH][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13089559	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13092102	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13097130	0.81[EUR][1000 genomes]
rs13098884	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs1374793	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs1447618	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1447619	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1447620	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1455873	1.00[YRI][hapmap]
rs1610158	0.85[CEU][hapmap]
rs17236725	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs17236746	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17826438	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1839015	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1839021	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2121718	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2306061	0.85[CEU][hapmap]
rs2367242	1.00[YRI][hapmap]
rs2593812	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs34168351	0.80[EUR][1000 genomes]
rs34297047	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4342141	0.81[CEU][hapmap]
rs4557202	0.81[CEU][hapmap]
rs4679662	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4679666	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4679922	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4679924	0.87[ASW][hapmap];0.92[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs4679926	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs5004752	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs55888276	0.85[EUR][1000 genomes]
rs55956394	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56665329	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61105146	0.83[EUR][1000 genomes]
rs62270272	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62270274	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62270275	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62280303	0.86[EUR][1000 genomes]
rs6441339	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6441354	0.81[CEU][hapmap]
rs6764019	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6796201	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6799160	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6804650	0.96[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes]
rs6806054	0.96[CEU][hapmap]
rs6809177	0.96[CEU][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs723757	0.86[EUR][1000 genomes]
rs7622047	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs7632423	0.96[CEU][hapmap]
rs778642	0.96[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs778643	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs778645	1.00[JPT][hapmap]
rs778649	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs778653	0.96[CEU][hapmap]
rs778654	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs778657	0.96[CEU][hapmap]
rs796609	0.96[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs898680	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs898681	0.88[CEU][hapmap]
rs9290065	1.00[ASW][hapmap];0.92[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs980975	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs980976	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9811594	0.96[CEU][hapmap]
rs9831488	1.00[JPT][hapmap]
rs9839885	1.00[YRI][hapmap]
rs9847866	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs9860360	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs9875200	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv519474	chr3:160620205-160630267	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160616600-160627600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:160621200-160629200	Weak transcription	Psoas Muscle	Psoas
3	chr3:160622000-160628800	Weak transcription	Fetal Brain Male	brain
4	chr3:160622600-160628800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:160625800-160629200	Weak transcription	Left Ventricle	heart
6	chr3:160627000-160627800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links