Variant report

Variant	rs9831488
Chromosome Location	chr3:160755062-160755063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160749654..160751759-chr3:160753566..160755069,2	MCF-7	breast:
2	chr3:160745725..160748261-chr3:160752866..160755134,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1037888	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs10513559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs11716265	1.00[JPT][hapmap]
rs12493960	0.93[ASN][1000 genomes]
rs13064176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs13089559	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13092102	1.00[JPT][hapmap]
rs13098884	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1599374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[MKK][hapmap];0.93[ASN][1000 genomes]
rs1599376	0.93[ASN][1000 genomes]
rs1599386	1.00[ASN][1000 genomes]
rs1609688	0.93[ASN][1000 genomes]
rs1610158	0.85[MEX][hapmap]
rs17236746	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17826438	1.00[JPT][hapmap]
rs2121718	1.00[JPT][hapmap]
rs2306061	0.86[MEX][hapmap]
rs2593812	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs4273380	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4370045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4414866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4597724	0.80[ASN][1000 genomes]
rs4616689	1.00[ASN][1000 genomes]
rs4679922	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4679924	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs4679926	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5004752	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs6762645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6764019	1.00[JPT][hapmap]
rs6765269	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6769642	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6772578	0.82[ASN][1000 genomes]
rs6774276	1.00[JPT][hapmap]
rs6774635	1.00[ASN][1000 genomes]
rs6775627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6799160	1.00[JPT][hapmap]
rs6804650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs7615592	0.80[ASN][1000 genomes]
rs7622047	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs7623206	0.80[ASN][1000 genomes]
rs7650703	0.87[ASN][1000 genomes]
rs778642	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[ASN][1000 genomes]
rs778643	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs778645	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs778646	0.93[ASN][1000 genomes]
rs778649	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs778654	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs796609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[ASN][1000 genomes]
rs898680	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs898681	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs9290065	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9790132	1.00[JPT][hapmap]
rs980975	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs980976	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9846254	0.81[MKK][hapmap]
rs9846756	0.80[ASN][1000 genomes]
rs9847866	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9848239	1.00[ASN][1000 genomes]
rs9860360	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160745200-160782600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:160749800-160759000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:160752200-160755200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:160752200-160755200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:160753800-160755200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:160753800-160763200	Weak transcription	Primary T cells from cord blood	blood
7	chr3:160754000-160755200	Enhancers	Primary hematopoietic stem cells	blood
8	chr3:160754000-160755200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:160754200-160755200	Enhancers	HUVEC	blood vessel
10	chr3:160754200-160760000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:160754400-160756200	Weak transcription	Osteobl	bone
12	chr3:160754400-160756600	Weak transcription	NH-A	brain

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