Variant report

Variant	rs6799160
Chromosome Location	chr3:160634889-160634890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160620374..160622809-chr3:160634406..160636878,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1037888	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs10513559	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs10513562	0.93[CEU][hapmap]
rs11708813	0.93[CEU][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs11716265	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11922752	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs11924510	0.89[EUR][1000 genomes]
rs12639128	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13064176	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13071909	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13073571	0.83[EUR][1000 genomes]
rs13086250	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13089559	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13092102	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13097130	0.83[EUR][1000 genomes]
rs13098884	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs1374793	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1447618	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs1447619	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs1447620	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs1455873	1.00[YRI][hapmap]
rs1610158	0.81[CEU][hapmap]
rs17236725	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17236746	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17826438	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1839015	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1839021	0.95[EUR][1000 genomes]
rs2121718	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2367242	1.00[YRI][hapmap]
rs2593812	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs34168351	0.82[EUR][1000 genomes]
rs34297047	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4679662	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs4679666	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4679922	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4679924	0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs4679926	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs5004752	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs55888276	0.86[EUR][1000 genomes]
rs55956394	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56665329	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61105146	0.84[EUR][1000 genomes]
rs62270272	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62270274	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62270275	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62280303	0.87[EUR][1000 genomes]
rs6441339	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs6764019	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796201	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6804650	0.92[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs6806054	0.93[CEU][hapmap]
rs6809177	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs723757	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7622047	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7630674	0.84[CEU][hapmap]
rs7632423	0.92[CEU][hapmap]
rs778642	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs778643	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs778645	1.00[JPT][hapmap]
rs778649	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs778653	0.92[CEU][hapmap]
rs778654	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs778657	0.93[CEU][hapmap]
rs796609	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs898680	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs898681	0.82[CEU][hapmap]
rs9290065	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs9790132	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs980975	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs980976	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9811594	0.92[CEU][hapmap]
rs9831488	1.00[JPT][hapmap]
rs9839885	1.00[YRI][hapmap]
rs9847866	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9860360	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs9875200	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160630200-160641400	Weak transcription	Psoas Muscle	Psoas
2	chr3:160634200-160635400	Enhancers	Fetal Brain Female	brain
3	chr3:160634600-160636000	Enhancers	Fetal Brain Male	brain
4	chr3:160634800-160635000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:160634800-160635400	Enhancers	Pancreatic Islets	Pancreatic Islet

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