Variant report

Variant	rs13071909
Chromosome Location	chr3:160604864-160604865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11708813	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11716265	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922752	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11924510	0.82[EUR][1000 genomes]
rs12639128	0.86[EUR][1000 genomes]
rs13064176	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13086250	0.90[EUR][1000 genomes]
rs13089559	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13092102	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374793	0.86[EUR][1000 genomes]
rs1447618	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1447619	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1447620	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17236725	0.90[EUR][1000 genomes]
rs17236746	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17826438	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1839015	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1839021	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2121718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34297047	0.90[EUR][1000 genomes]
rs4679662	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4679666	0.91[EUR][1000 genomes]
rs4679922	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4679924	0.82[EUR][1000 genomes]
rs55888276	0.81[EUR][1000 genomes]
rs55956394	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56665329	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270272	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270274	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270275	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280303	0.82[EUR][1000 genomes]
rs6441339	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6764019	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6796201	0.90[EUR][1000 genomes]
rs6799160	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6804650	0.82[EUR][1000 genomes]
rs6809177	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs723757	0.82[EUR][1000 genomes]
rs9790132	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3391648	chr3:160602299-160620598	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160604200-160605000	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr3:160604400-160605200	Enhancers	GM12878-XiMat	blood
3	chr3:160604400-160616600	Weak transcription	Psoas Muscle	Psoas
4	chr3:160604600-160606000	Weak transcription	Dnd41	blood

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