Variant report
| Variant | rs11924510 |
|---|---|
| Chromosome Location | chr3:160633084-160633085 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11708813 | 0.82[EUR][1000 genomes] |
| rs11716265 | 0.82[EUR][1000 genomes] |
| rs11922752 | 0.83[EUR][1000 genomes] |
| rs12639128 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13071909 | 0.82[EUR][1000 genomes] |
| rs13086250 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13092102 | 0.82[EUR][1000 genomes] |
| rs1374793 | 0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1447618 | 0.83[EUR][1000 genomes] |
| rs1447619 | 0.82[EUR][1000 genomes] |
| rs1447620 | 0.82[EUR][1000 genomes] |
| rs17236725 | 0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1839021 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2121718 | 0.82[EUR][1000 genomes] |
| rs34297047 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4679662 | 0.82[EUR][1000 genomes] |
| rs4679666 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs55956394 | 0.82[EUR][1000 genomes] |
| rs56665329 | 0.82[EUR][1000 genomes] |
| rs62270274 | 0.83[EUR][1000 genomes] |
| rs62270275 | 0.83[EUR][1000 genomes] |
| rs6441339 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6764019 | 0.85[EUR][1000 genomes] |
| rs6796201 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6799160 | 0.89[EUR][1000 genomes] |
| rs6809177 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9790132 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532666 | chr3:159777847-160703202 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 271 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:160630200-160641400 | Weak transcription | Psoas Muscle | Psoas |
