Variant report

Variant	rs1455873
Chromosome Location	chr3:160508778-160508779
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10513559	1.00[YRI][hapmap]
rs11708813	1.00[YRI][hapmap]
rs11716265	1.00[YRI][hapmap]
rs13064176	1.00[YRI][hapmap]
rs13089559	1.00[YRI][hapmap]
rs13092102	1.00[YRI][hapmap]
rs17236746	1.00[YRI][hapmap]
rs17826438	1.00[YRI][hapmap]
rs2121718	1.00[YRI][hapmap]
rs2367242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4679922	1.00[YRI][hapmap]
rs6764019	1.00[YRI][hapmap]
rs6799160	1.00[YRI][hapmap]
rs9790132	1.00[YRI][hapmap]
rs9839885	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160498400-160522600	Weak transcription	Right Ventricle	heart
2	chr3:160503600-160514600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:160504400-160511600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:160508200-160509000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:160508200-160509000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:160508200-160509000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:160508200-160509600	Enhancers	Stomach Smooth Muscle	stomach
8	chr3:160508200-160509800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr3:160508400-160509000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:160508400-160509600	Enhancers	Colon Smooth Muscle	Colon
11	chr3:160508600-160509000	Enhancers	Adipose Nuclei	Adipose
12	chr3:160508600-160509000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:160508600-160512600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:160508600-160512600	Weak transcription	Psoas Muscle	Psoas
15	chr3:160508600-160513600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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