Variant report

Variant	rs61105146
Chromosome Location	chr3:160651949-160651950
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160643537..160645831-chr3:160647633..160653129,5	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10513559	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513562	0.82[EUR][1000 genomes]
rs11708076	0.85[ASN][1000 genomes]
rs11922752	0.81[EUR][1000 genomes]
rs12639128	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13064176	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073571	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086250	0.84[EUR][1000 genomes]
rs13089559	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097130	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098884	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1374793	0.87[EUR][1000 genomes]
rs1447618	0.81[EUR][1000 genomes]
rs17236725	0.86[EUR][1000 genomes]
rs17236746	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17826438	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1839021	0.81[EUR][1000 genomes]
rs2593812	0.86[EUR][1000 genomes]
rs34168351	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34297047	0.84[EUR][1000 genomes]
rs4679666	0.83[EUR][1000 genomes]
rs4679671	0.82[EUR][1000 genomes]
rs4679922	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679924	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679926	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5004752	0.82[EUR][1000 genomes]
rs55672403	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55888276	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270274	0.81[EUR][1000 genomes]
rs62270275	0.81[EUR][1000 genomes]
rs62280303	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280331	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62280333	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441339	0.81[EUR][1000 genomes]
rs6764019	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6796201	0.84[EUR][1000 genomes]
rs6799160	0.84[EUR][1000 genomes]
rs6804650	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806054	0.85[EUR][1000 genomes]
rs6809177	0.84[EUR][1000 genomes]
rs723757	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628880	0.81[EUR][1000 genomes]
rs7632423	0.81[EUR][1000 genomes]
rs778642	0.86[EUR][1000 genomes]
rs778643	0.86[EUR][1000 genomes]
rs778645	0.86[EUR][1000 genomes]
rs778646	0.86[EUR][1000 genomes]
rs778649	0.86[EUR][1000 genomes]
rs778653	0.85[EUR][1000 genomes]
rs778654	0.85[EUR][1000 genomes]
rs778657	0.85[EUR][1000 genomes]
rs778663	0.83[EUR][1000 genomes]
rs796609	0.86[EUR][1000 genomes]
rs9790132	0.83[EUR][1000 genomes]
rs9811594	0.82[EUR][1000 genomes]
rs9860360	0.82[EUR][1000 genomes]
rs9875200	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160644800-160654400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:160647600-160652400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:160648000-160653200	Weak transcription	Adipose Nuclei	Adipose
4	chr3:160651000-160653400	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr3:160651800-160652000	Enhancers	Fetal Brain Male	brain

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