Variant report

Variant	rs4679671
Chromosome Location	chr3:160740688-160740689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160739507..160741947-chr3:160747617..160749551,2	MCF-7	breast:
2	chr3:160739787..160741430-chr3:160758858..160761533,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1037888	0.90[EUR][1000 genomes]
rs10513559	0.86[EUR][1000 genomes]
rs10513562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708076	0.86[EUR][1000 genomes]
rs13064176	0.82[EUR][1000 genomes]
rs13073571	0.86[EUR][1000 genomes]
rs13089559	0.82[EUR][1000 genomes]
rs13097130	0.86[EUR][1000 genomes]
rs13098884	0.94[EUR][1000 genomes]
rs17236746	0.81[EUR][1000 genomes]
rs17826438	0.81[EUR][1000 genomes]
rs2306061	0.84[EUR][1000 genomes]
rs2593812	0.96[EUR][1000 genomes]
rs34168351	0.85[EUR][1000 genomes]
rs4679922	0.81[EUR][1000 genomes]
rs4679924	0.82[EUR][1000 genomes]
rs4679926	0.88[EUR][1000 genomes]
rs5004752	0.99[EUR][1000 genomes]
rs55672403	0.93[EUR][1000 genomes]
rs55888276	0.83[EUR][1000 genomes]
rs61105146	0.82[EUR][1000 genomes]
rs62280303	0.82[EUR][1000 genomes]
rs62280331	0.93[EUR][1000 genomes]
rs62280333	0.95[EUR][1000 genomes]
rs6441348	0.87[EUR][1000 genomes]
rs6769642	0.92[EUR][1000 genomes]
rs6772578	0.90[EUR][1000 genomes]
rs6786871	0.96[EUR][1000 genomes]
rs6804650	0.82[EUR][1000 genomes]
rs6806054	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723757	0.81[EUR][1000 genomes]
rs7622047	0.89[EUR][1000 genomes]
rs7628880	0.98[EUR][1000 genomes]
rs7632423	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778642	0.96[EUR][1000 genomes]
rs778643	0.96[EUR][1000 genomes]
rs778645	0.96[EUR][1000 genomes]
rs778646	0.96[EUR][1000 genomes]
rs778648	0.91[EUR][1000 genomes]
rs778649	0.96[EUR][1000 genomes]
rs778653	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs778654	0.96[EUR][1000 genomes]
rs778657	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs778663	0.94[EUR][1000 genomes]
rs796609	0.96[EUR][1000 genomes]
rs898680	0.90[EUR][1000 genomes]
rs898681	0.89[EUR][1000 genomes]
rs9290065	0.89[EUR][1000 genomes]
rs980975	0.90[EUR][1000 genomes]
rs980976	0.90[EUR][1000 genomes]
rs9811594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847866	0.94[EUR][1000 genomes]
rs9860360	0.99[EUR][1000 genomes]
rs9875200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160732800-160745000	Weak transcription	Psoas Muscle	Psoas
2	chr3:160733600-160746000	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links