Variant report

Variant	rs6786871
Chromosome Location	chr3:160744346-160744347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1037888	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10513559	0.84[EUR][1000 genomes]
rs10513562	0.96[EUR][1000 genomes]
rs11708076	0.84[EUR][1000 genomes]
rs13073571	0.84[EUR][1000 genomes]
rs13097130	0.84[EUR][1000 genomes]
rs13098884	0.92[EUR][1000 genomes]
rs2306061	0.80[EUR][1000 genomes]
rs2593812	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34168351	0.82[EUR][1000 genomes]
rs4679671	0.96[EUR][1000 genomes]
rs4679926	0.85[EUR][1000 genomes]
rs5004752	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55672403	0.91[EUR][1000 genomes]
rs55888276	0.80[EUR][1000 genomes]
rs62280331	0.90[EUR][1000 genomes]
rs62280333	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6441348	0.85[EUR][1000 genomes]
rs6769642	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6772578	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6806054	0.93[EUR][1000 genomes]
rs7622047	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7628880	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7632423	0.95[EUR][1000 genomes]
rs778642	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs778643	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs778645	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs778646	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs778648	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778649	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs778653	0.93[EUR][1000 genomes]
rs778654	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778657	0.93[EUR][1000 genomes]
rs778663	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs796609	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs898680	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs898681	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9290065	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs980975	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs980976	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9811594	0.96[EUR][1000 genomes]
rs9847866	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9860360	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9875200	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160732800-160745000	Weak transcription	Psoas Muscle	Psoas
2	chr3:160733600-160746000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:160740800-160745600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:160742200-160746000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:160744000-160745200	Enhancers	Placenta	Placenta
6	chr3:160744000-160745600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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