Variant report

Variant	rs9875200
Chromosome Location	chr3:160733708-160733709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160732451..160734009-chr3:160957436..160960399,2	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1026572	0.82[CEU][hapmap]
rs1037888	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs10513559	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10513561	0.90[JPT][hapmap]
rs10513562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708076	0.86[EUR][1000 genomes]
rs11708813	1.00[CEU][hapmap]
rs11716265	1.00[CEU][hapmap]
rs11922752	1.00[CEU][hapmap]
rs12486103	0.81[JPT][hapmap]
rs12487156	0.90[JPT][hapmap]
rs12488403	0.90[JPT][hapmap]
rs12496235	0.81[JPT][hapmap]
rs12639128	1.00[CEU][hapmap]
rs13064176	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs13073571	0.86[EUR][1000 genomes]
rs13086250	1.00[CEU][hapmap]
rs13089559	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs13092102	1.00[CEU][hapmap]
rs13097130	0.86[EUR][1000 genomes]
rs13098884	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1374793	1.00[CEU][hapmap]
rs1447618	1.00[CEU][hapmap]
rs1447619	1.00[CEU][hapmap]
rs1447620	1.00[CEU][hapmap]
rs1599374	0.85[CEU][hapmap]
rs1610158	0.89[CEU][hapmap]
rs16831581	0.81[JPT][hapmap]
rs16831611	0.90[JPT][hapmap]
rs16831799	0.91[JPT][hapmap]
rs16831850	0.80[JPT][hapmap]
rs16831864	0.81[JPT][hapmap]
rs17236725	1.00[CEU][hapmap]
rs17236746	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17826438	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2121718	1.00[CEU][hapmap]
rs2306061	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs2593812	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs34168351	0.85[EUR][1000 genomes]
rs3925722	0.81[JPT][hapmap]
rs4557202	0.86[CEU][hapmap]
rs4679662	1.00[CEU][hapmap]
rs4679666	1.00[CEU][hapmap]
rs4679671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679922	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4679924	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs4679926	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs5004752	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs55672403	0.93[EUR][1000 genomes]
rs55888276	0.83[EUR][1000 genomes]
rs61105146	0.82[EUR][1000 genomes]
rs62280303	0.82[EUR][1000 genomes]
rs62280331	0.93[EUR][1000 genomes]
rs62280333	0.95[EUR][1000 genomes]
rs6441339	1.00[CEU][hapmap]
rs6441348	0.87[EUR][1000 genomes]
rs6441350	0.80[JPT][hapmap]
rs6441354	0.85[CEU][hapmap]
rs6764019	1.00[CEU][hapmap]
rs6769642	0.92[EUR][1000 genomes]
rs6772578	0.90[EUR][1000 genomes]
rs6786871	0.96[EUR][1000 genomes]
rs6787599	0.81[JPT][hapmap]
rs6790705	0.81[JPT][hapmap]
rs6796168	0.80[JPT][hapmap]
rs6799160	0.93[CEU][hapmap]
rs6804650	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6806054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806729	0.90[JPT][hapmap]
rs6807796	0.81[JPT][hapmap]
rs6809177	1.00[CEU][hapmap]
rs723757	0.81[EUR][1000 genomes]
rs7622047	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs7627500	0.90[JPT][hapmap]
rs7628880	0.98[EUR][1000 genomes]
rs7632423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778642	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs778643	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs778645	0.96[EUR][1000 genomes]
rs778646	0.96[EUR][1000 genomes]
rs778648	0.91[EUR][1000 genomes]
rs778649	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs778653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs778654	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs778657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs778663	0.94[EUR][1000 genomes]
rs796609	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs898680	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs898681	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs9290065	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs935499	0.81[JPT][hapmap]
rs9790132	0.96[CEU][hapmap]
rs980975	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs980976	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs9811594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818992	0.81[JPT][hapmap]
rs9820825	0.88[CEU][hapmap]
rs9826857	0.80[JPT][hapmap]
rs9830183	0.80[JPT][hapmap]
rs9847866	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs9860360	1.00[CEU][hapmap];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160732000-160734200	Enhancers	Colon Smooth Muscle	Colon
2	chr3:160732400-160733800	Enhancers	Left Ventricle	heart
3	chr3:160732600-160733800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:160732800-160745000	Weak transcription	Psoas Muscle	Psoas
5	chr3:160733000-160733800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:160733000-160734200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:160733000-160735200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:160733200-160733800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:160733400-160736600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:160733600-160746000	Weak transcription	Stomach Smooth Muscle	stomach

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