Variant report

Variant	rs62280333
Chromosome Location	chr3:160689060-160689061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1037888	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10513559	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10513562	0.95[EUR][1000 genomes]
rs11708076	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639128	0.81[EUR][1000 genomes]
rs13064176	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13073571	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13089559	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13097130	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13098884	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374793	0.81[EUR][1000 genomes]
rs17236746	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17826438	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2306061	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2593812	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34168351	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4679671	0.95[EUR][1000 genomes]
rs4679922	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4679924	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4679926	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5004752	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55672403	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55888276	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61105146	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62280303	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62280331	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441348	0.84[EUR][1000 genomes]
rs6764019	0.81[EUR][1000 genomes]
rs6769642	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6772578	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6786871	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6804650	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6806054	0.98[EUR][1000 genomes]
rs723757	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7622047	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7628880	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7632423	0.94[EUR][1000 genomes]
rs778642	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs778643	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs778645	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs778646	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs778648	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs778649	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs778653	0.98[EUR][1000 genomes]
rs778654	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs778657	0.98[EUR][1000 genomes]
rs778663	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs796609	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs898680	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs898681	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9290065	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs980975	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs980976	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9811594	0.95[EUR][1000 genomes]
rs9847866	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9860360	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9875200	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv592135	chr3:160682500-160689164	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160667400-160696000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:160670400-160700400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:160678400-160697600	Weak transcription	Primary T cells from cord blood	blood
4	chr3:160684600-160689200	Weak transcription	Dnd41	blood
5	chr3:160687000-160691000	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:160687000-160696600	Weak transcription	Right Ventricle	heart
7	chr3:160687000-160698600	Weak transcription	Adipose Nuclei	Adipose
8	chr3:160687600-160689400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:160687600-160691000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr3:160687600-160691000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:160687600-160693600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:160688200-160690800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr3:160689000-160689800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:160689000-160689800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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