Variant report
| Variant | rs6441348 |
|---|---|
| Chromosome Location | chr3:160730061-160730062 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10513562 | 0.87[EUR][1000 genomes] |
| rs13098884 | 0.84[EUR][1000 genomes] |
| rs2593812 | 0.85[EUR][1000 genomes] |
| rs4613509 | 0.83[AMR][1000 genomes] |
| rs4679671 | 0.87[EUR][1000 genomes] |
| rs5004752 | 0.87[EUR][1000 genomes] |
| rs55672403 | 0.83[EUR][1000 genomes] |
| rs62280331 | 0.82[EUR][1000 genomes] |
| rs62280333 | 0.84[EUR][1000 genomes] |
| rs6786871 | 0.85[EUR][1000 genomes] |
| rs6806054 | 0.86[EUR][1000 genomes] |
| rs7628880 | 0.86[EUR][1000 genomes] |
| rs7632423 | 0.86[EUR][1000 genomes] |
| rs778642 | 0.85[EUR][1000 genomes] |
| rs778643 | 0.85[EUR][1000 genomes] |
| rs778645 | 0.85[EUR][1000 genomes] |
| rs778646 | 0.85[EUR][1000 genomes] |
| rs778648 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs778649 | 0.85[EUR][1000 genomes] |
| rs778653 | 0.86[EUR][1000 genomes] |
| rs778654 | 0.86[EUR][1000 genomes] |
| rs778657 | 0.86[EUR][1000 genomes] |
| rs778663 | 0.84[EUR][1000 genomes] |
| rs796609 | 0.85[EUR][1000 genomes] |
| rs9811594 | 0.87[EUR][1000 genomes] |
| rs9847866 | 0.82[EUR][1000 genomes] |
| rs9860360 | 0.87[EUR][1000 genomes] |
| rs9875200 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931072 | chr3:160669567-161159779 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 98 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:160726400-160732600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
