Variant report

Variant	rs16831864
Chromosome Location	chr3:160791281-160791282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160781443..160783840-chr3:160790596..160792129,2	K562	blood:
2	chr3:160785968..160788814-chr3:160790660..160793617,2	K562	blood:
3	chr3:160790555..160793419-chr3:161085897..161087405,2	MCF-7	breast:

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10513557	0.82[CHB][hapmap]
rs10513561	0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs10513562	0.81[JPT][hapmap]
rs12485519	0.84[ASN][1000 genomes]
rs12486069	1.00[ASN][1000 genomes]
rs12486103	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12487156	0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs12488403	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs12489004	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12489125	1.00[ASN][1000 genomes]
rs12490149	0.87[ASN][1000 genomes]
rs12493266	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12496235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12496837	0.85[AMR][1000 genomes]
rs13315320	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13319771	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1447612	0.82[CHB][hapmap]
rs1447613	0.82[CHB][hapmap]
rs16831555	0.82[CHB][hapmap]
rs16831581	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs16831611	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs16831799	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16831850	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16831853	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs16831882	1.00[ASN][1000 genomes]
rs16831942	1.00[ASN][1000 genomes]
rs28451189	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28704960	1.00[ASN][1000 genomes]
rs28713364	0.85[AMR][1000 genomes]
rs3925722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4296611	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4352387	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4468992	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4580574	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4635725	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56807417	0.91[AMR][1000 genomes]
rs57903480	0.84[ASN][1000 genomes]
rs59567999	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59593286	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs59757775	0.84[ASN][1000 genomes]
rs59776766	1.00[ASN][1000 genomes]
rs60121330	1.00[ASN][1000 genomes]
rs6441350	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6441358	0.86[YRI][hapmap]
rs6441363	0.88[AMR][1000 genomes]
rs6441365	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6762064	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6771581	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6774919	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6775446	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6775931	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6778186	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6782415	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6782518	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6785714	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6787447	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6787599	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs6788738	0.85[AMR][1000 genomes]
rs6790705	0.82[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes]
rs6790805	0.87[ASN][1000 genomes]
rs6796168	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6801664	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6805976	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6806054	0.81[JPT][hapmap]
rs6806729	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6807796	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs73017340	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73019384	0.91[AMR][1000 genomes]
rs73021260	0.89[AFR][1000 genomes]
rs73026933	0.90[ASN][1000 genomes]
rs73026967	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73026968	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73026983	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73026987	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73026989	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs734915	0.84[ASN][1000 genomes]
rs7615833	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7615868	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7626773	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7627500	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7632423	0.80[JPT][hapmap]
rs7634299	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7639529	0.91[AMR][1000 genomes]
rs7652624	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs778653	0.80[JPT][hapmap]
rs9290070	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9290071	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs935499	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs9682249	0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9682995	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9810351	1.00[ASN][1000 genomes]
rs9818470	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9818835	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9818992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9819793	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9822916	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9823424	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9824535	1.00[ASN][1000 genomes]
rs9824805	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9826857	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9830183	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9833270	0.90[ASN][1000 genomes]
rs9834806	0.88[AMR][1000 genomes]
rs9838945	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9841871	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9842290	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9847842	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9855112	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9856742	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9858907	1.00[ASN][1000 genomes]
rs9859641	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9862867	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9871753	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9875200	0.81[JPT][hapmap]
rs9876077	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9877309	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9884100	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9985364	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160780800-160821400	Weak transcription	Fetal Brain Male	brain
2	chr3:160781400-160803400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:160781800-160798200	Weak transcription	Fetal Stomach	stomach
4	chr3:160781800-160822000	Weak transcription	Thymus	Thymus
5	chr3:160782000-160799800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:160782800-160795000	Weak transcription	Right Ventricle	heart
7	chr3:160784200-160799000	Weak transcription	Ovary	ovary
8	chr3:160787000-160822000	Weak transcription	Primary T cells from cord blood	blood
9	chr3:160787200-160818800	Weak transcription	Brain Germinal Matrix	brain
10	chr3:160787600-160803200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:160788000-160799600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:160788000-160799600	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:160788000-160802800	Weak transcription	Fetal Kidney	kidney
14	chr3:160788200-160792400	Weak transcription	Hela-S3	cervix
15	chr3:160788200-160803400	Weak transcription	Fetal Brain Female	brain
16	chr3:160788600-160791800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:160788600-160803400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:160788600-160807600	Weak transcription	Pancreas	Pancrea
19	chr3:160788800-160799400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:160788800-160803400	Weak transcription	Adipose Nuclei	Adipose
21	chr3:160789200-160799600	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:160789200-160803200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:160789600-160793600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr3:160789600-160818800	Weak transcription	Esophagus	oesophagus
25	chr3:160789800-160798400	Weak transcription	Left Ventricle	heart
26	chr3:160789800-160802600	Weak transcription	Osteobl	bone
27	chr3:160790000-160798400	Weak transcription	Right Atrium	heart

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