Variant report

Variant	rs734915
Chromosome Location	chr3:160727163-160727164
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12485519	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12486069	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12486103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12489125	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12493266	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496235	0.84[ASN][1000 genomes]
rs12496837	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16831599	1.00[EUR][1000 genomes]
rs16831620	1.00[EUR][1000 genomes]
rs16831799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831850	0.84[ASN][1000 genomes]
rs16831864	0.84[ASN][1000 genomes]
rs16831882	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16831942	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1947146	1.00[EUR][1000 genomes]
rs28704960	0.84[ASN][1000 genomes]
rs3925722	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55792556	1.00[EUR][1000 genomes]
rs55963912	1.00[EUR][1000 genomes]
rs56807417	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58693796	1.00[EUR][1000 genomes]
rs59593286	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59776766	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59867530	0.80[AMR][1000 genomes]
rs60030122	1.00[EUR][1000 genomes]
rs60121330	0.84[ASN][1000 genomes]
rs61136727	1.00[EUR][1000 genomes]
rs6441350	0.84[ASN][1000 genomes]
rs6771581	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6790705	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6796168	0.84[ASN][1000 genomes]
rs6806729	1.00[EUR][1000 genomes]
rs73019384	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73875408	1.00[EUR][1000 genomes]
rs73875427	1.00[EUR][1000 genomes]
rs73875428	1.00[EUR][1000 genomes]
rs7627500	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639529	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9682249	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9682995	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9810351	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9818835	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9818992	0.90[AMR][1000 genomes]
rs9823424	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9824535	0.84[ASN][1000 genomes]
rs9826857	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9830183	0.84[ASN][1000 genomes]
rs9858907	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160726400-160732600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:160726600-160727400	Enhancers	Fetal Kidney	kidney

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