Variant report

Variant	rs6806729
Chromosome Location	chr3:160654474-160654475
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10513557	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs10513561	0.92[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MKK][hapmap];0.81[YRI][hapmap]
rs10513562	0.90[JPT][hapmap]
rs12486103	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12486691	0.86[ASN][1000 genomes]
rs12487156	0.92[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.81[YRI][hapmap]
rs12488403	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12488621	0.83[LWK][hapmap]
rs12492376	1.00[ASN][1000 genomes]
rs12493266	1.00[EUR][1000 genomes]
rs1447612	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs1447613	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs16831546	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs16831549	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs16831552	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs16831555	1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[ASN][1000 genomes]
rs16831581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16831599	1.00[EUR][1000 genomes]
rs16831611	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16831620	1.00[EUR][1000 genomes]
rs16831645	0.91[LWK][hapmap];0.85[MKK][hapmap]
rs16831799	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16831850	0.90[JPT][hapmap];1.00[MEX][hapmap]
rs16831864	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1947146	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3925722	0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs55792556	1.00[EUR][1000 genomes]
rs55963912	1.00[EUR][1000 genomes]
rs56807417	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58693796	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59252183	0.94[ASN][1000 genomes]
rs59593286	1.00[EUR][1000 genomes]
rs59647128	0.91[ASN][1000 genomes]
rs60030122	1.00[EUR][1000 genomes]
rs61136727	1.00[EUR][1000 genomes]
rs6441341	1.00[ASN][1000 genomes]
rs6441350	0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap]
rs6771581	1.00[EUR][1000 genomes]
rs6787599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6790705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6796168	0.90[ASW][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.91[LWK][hapmap];0.92[MEX][hapmap]
rs6800309	0.94[ASN][1000 genomes]
rs6806054	0.90[JPT][hapmap]
rs6807796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73019384	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs734915	1.00[EUR][1000 genomes]
rs73875408	1.00[EUR][1000 genomes]
rs73875427	1.00[EUR][1000 genomes]
rs73875428	1.00[EUR][1000 genomes]
rs7627500	1.00[ASW][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs7632423	0.90[JPT][hapmap]
rs7639529	1.00[EUR][1000 genomes]
rs778653	0.90[JPT][hapmap]
rs778657	0.90[JPT][hapmap]
rs935499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9682249	1.00[EUR][1000 genomes]
rs9682995	1.00[EUR][1000 genomes]
rs9811594	0.90[JPT][hapmap]
rs9818992	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs9826857	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs9875200	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160653600-160659000	Weak transcription	Liver	Liver
2	chr3:160654000-160657800	Weak transcription	Placenta	Placenta

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