Variant report

Variant	rs12486103
Chromosome Location	chr3:160704347-160704348
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10513557	1.00[CHB][hapmap]
rs10513561	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10513562	0.81[JPT][hapmap]
rs12485519	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12486069	0.83[AMR][1000 genomes]
rs12487156	1.00[JPT][hapmap]
rs12488403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12489125	0.83[AMR][1000 genomes]
rs12492376	0.82[ASN][1000 genomes]
rs12493266	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12496235	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12496837	0.90[AMR][1000 genomes]
rs1447612	1.00[CHB][hapmap]
rs1447613	1.00[CHB][hapmap]
rs16831546	1.00[CHB][hapmap]
rs16831549	1.00[CHB][hapmap]
rs16831552	1.00[CHB][hapmap]
rs16831555	1.00[CHB][hapmap]
rs16831581	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16831599	1.00[EUR][1000 genomes]
rs16831611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16831620	1.00[EUR][1000 genomes]
rs16831799	0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16831850	0.90[JPT][hapmap]
rs16831864	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs16831882	0.84[AMR][1000 genomes]
rs16831942	0.83[AMR][1000 genomes]
rs1947146	1.00[EUR][1000 genomes]
rs3925722	0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55792556	1.00[EUR][1000 genomes]
rs55963912	1.00[EUR][1000 genomes]
rs56807417	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58693796	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59593286	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59776766	0.83[AMR][1000 genomes]
rs59867530	0.80[AMR][1000 genomes]
rs60030122	1.00[EUR][1000 genomes]
rs61136727	1.00[EUR][1000 genomes]
rs6441341	0.82[ASN][1000 genomes]
rs6441350	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6771581	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6773813	0.81[ASN][1000 genomes]
rs6787599	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6790705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796168	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6806054	0.81[JPT][hapmap]
rs6806729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6807796	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73019384	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73875408	1.00[EUR][1000 genomes]
rs73875427	1.00[EUR][1000 genomes]
rs73875428	1.00[EUR][1000 genomes]
rs7615868	0.82[CHB][hapmap]
rs7627500	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7632423	0.90[JPT][hapmap]
rs7639529	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778653	0.90[JPT][hapmap]
rs778657	0.90[JPT][hapmap]
rs935499	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9682249	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9682995	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9810351	0.83[AMR][1000 genomes]
rs9811594	0.90[JPT][hapmap]
rs9818835	0.90[AMR][1000 genomes]
rs9818992	0.82[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes]
rs9823424	0.90[AMR][1000 genomes]
rs9826857	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes]
rs9830183	0.82[CHB][hapmap]
rs9858907	0.83[AMR][1000 genomes]
rs9875200	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1007004	chr3:160695108-160718154	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160697200-160710600	Weak transcription	Left Ventricle	heart
2	chr3:160703400-160704800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr3:160703600-160704600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr3:160703600-160705000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:160704000-160704600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:160704200-160704800	Weak transcription	Right Atrium	heart
7	chr3:160704200-160708600	Weak transcription	Stomach Smooth Muscle	stomach

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