Variant report

Variant	rs58693796
Chromosome Location	chr3:160657348-160657349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10513557	0.91[ASN][1000 genomes]
rs12486103	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12486691	0.86[ASN][1000 genomes]
rs12488403	1.00[ASN][1000 genomes]
rs12492376	1.00[ASN][1000 genomes]
rs12493266	1.00[EUR][1000 genomes]
rs1447612	0.91[ASN][1000 genomes]
rs1447613	0.91[ASN][1000 genomes]
rs16831546	0.83[ASN][1000 genomes]
rs16831549	0.91[ASN][1000 genomes]
rs16831552	0.91[ASN][1000 genomes]
rs16831555	0.91[ASN][1000 genomes]
rs16831581	0.94[ASN][1000 genomes]
rs16831599	1.00[EUR][1000 genomes]
rs16831611	1.00[ASN][1000 genomes]
rs16831620	1.00[EUR][1000 genomes]
rs16831645	0.83[AFR][1000 genomes]
rs16831799	1.00[EUR][1000 genomes]
rs1947146	1.00[EUR][1000 genomes]
rs3925722	1.00[EUR][1000 genomes]
rs55792556	1.00[EUR][1000 genomes]
rs55963912	1.00[EUR][1000 genomes]
rs56807417	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59252183	0.94[ASN][1000 genomes]
rs59593286	1.00[EUR][1000 genomes]
rs59647128	0.91[ASN][1000 genomes]
rs60030122	1.00[EUR][1000 genomes]
rs61136727	1.00[EUR][1000 genomes]
rs6441341	1.00[ASN][1000 genomes]
rs6771581	1.00[EUR][1000 genomes]
rs6787599	0.94[ASN][1000 genomes]
rs6790705	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6800309	0.94[ASN][1000 genomes]
rs6806729	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807796	0.94[ASN][1000 genomes]
rs73019384	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs734915	1.00[EUR][1000 genomes]
rs73875408	1.00[EUR][1000 genomes]
rs73875427	1.00[EUR][1000 genomes]
rs73875428	1.00[EUR][1000 genomes]
rs7627500	1.00[EUR][1000 genomes]
rs7639529	1.00[EUR][1000 genomes]
rs935499	0.94[ASN][1000 genomes]
rs9682249	1.00[EUR][1000 genomes]
rs9682995	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160653600-160659000	Weak transcription	Liver	Liver
2	chr3:160654000-160657800	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links