Variant report

Variant	rs7627500
Chromosome Location	chr3:160724933-160724934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10513557	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs10513561	0.92[ASW][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MKK][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10513562	0.90[JPT][hapmap]
rs12485519	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12486069	0.84[ASN][1000 genomes]
rs12486103	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12487156	0.92[ASW][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12488403	0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs12488621	0.83[LWK][hapmap]
rs12489125	0.84[ASN][1000 genomes]
rs12493266	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496235	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1447612	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs1447613	0.82[CHB][hapmap]
rs16831546	0.82[CHB][hapmap]
rs16831549	0.82[CHB][hapmap]
rs16831552	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs16831555	0.82[CHB][hapmap]
rs16831581	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16831599	1.00[EUR][1000 genomes]
rs16831611	0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs16831620	1.00[EUR][1000 genomes]
rs16831645	0.91[LWK][hapmap];0.85[MKK][hapmap];0.93[YRI][hapmap]
rs16831799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831850	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16831864	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16831882	0.84[ASN][1000 genomes]
rs16831942	0.84[ASN][1000 genomes]
rs1947146	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28704960	0.84[ASN][1000 genomes]
rs3925722	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55792556	1.00[EUR][1000 genomes]
rs55963912	1.00[EUR][1000 genomes]
rs56807417	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58693796	1.00[EUR][1000 genomes]
rs59593286	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59776766	0.84[ASN][1000 genomes]
rs60030122	1.00[EUR][1000 genomes]
rs60121330	0.84[ASN][1000 genomes]
rs61136727	1.00[EUR][1000 genomes]
rs6441350	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6771581	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6773813	0.84[AFR][1000 genomes]
rs6787599	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6790705	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6796168	0.90[ASW][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[LWK][hapmap];0.92[MEX][hapmap];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6806054	0.90[JPT][hapmap]
rs6806729	1.00[ASW][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs6807796	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs73019384	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs734915	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875408	1.00[EUR][1000 genomes]
rs73875427	1.00[EUR][1000 genomes]
rs73875428	1.00[EUR][1000 genomes]
rs7615868	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs7632423	0.90[JPT][hapmap]
rs7639529	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs778653	0.90[JPT][hapmap]
rs778657	0.90[JPT][hapmap]
rs935499	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9682249	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9682995	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9810351	0.84[ASN][1000 genomes]
rs9811594	0.90[JPT][hapmap]
rs9818835	0.84[ASN][1000 genomes]
rs9818992	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs9823424	0.84[ASN][1000 genomes]
rs9824535	0.84[ASN][1000 genomes]
rs9826857	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs9830183	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9855112	0.82[AMR][1000 genomes]
rs9858907	0.84[ASN][1000 genomes]
rs9875200	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv518915	chr3:160723364-160724933	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160724800-160726400	Enhancers	Placenta	Placenta

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