Variant report

Variant	rs28704960
Chromosome Location	chr3:160856231-160856232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1017799	0.81[ASN][1000 genomes]
rs12485519	0.84[ASN][1000 genomes]
rs12486069	1.00[ASN][1000 genomes]
rs12489004	0.87[ASN][1000 genomes]
rs12489125	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12490149	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12493266	0.84[ASN][1000 genomes]
rs12496235	1.00[ASN][1000 genomes]
rs12496837	0.81[AMR][1000 genomes]
rs13315320	0.87[ASN][1000 genomes]
rs13319558	0.81[ASN][1000 genomes]
rs13319771	0.87[ASN][1000 genomes]
rs16831799	0.84[ASN][1000 genomes]
rs16831850	1.00[ASN][1000 genomes]
rs16831864	1.00[ASN][1000 genomes]
rs16831882	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16831942	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28451189	0.82[ASN][1000 genomes]
rs3925722	0.94[ASN][1000 genomes]
rs4296611	0.90[ASN][1000 genomes]
rs4352387	0.87[ASN][1000 genomes]
rs4468992	0.87[ASN][1000 genomes]
rs4580574	0.90[ASN][1000 genomes]
rs4635725	0.84[ASN][1000 genomes]
rs57903480	0.84[ASN][1000 genomes]
rs59567999	0.90[ASN][1000 genomes]
rs59593286	0.88[ASN][1000 genomes]
rs59757775	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59776766	1.00[ASN][1000 genomes]
rs59867530	0.84[AMR][1000 genomes]
rs60121330	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6441350	1.00[ASN][1000 genomes]
rs6441365	0.90[ASN][1000 genomes]
rs6441372	0.87[ASN][1000 genomes]
rs6441375	0.81[ASN][1000 genomes]
rs6762064	0.90[ASN][1000 genomes]
rs6771581	0.88[ASN][1000 genomes]
rs6774919	0.90[ASN][1000 genomes]
rs6775446	0.87[ASN][1000 genomes]
rs6775931	0.87[ASN][1000 genomes]
rs6778186	0.87[ASN][1000 genomes]
rs6782415	0.82[ASN][1000 genomes]
rs6782518	0.87[ASN][1000 genomes]
rs6785714	0.87[ASN][1000 genomes]
rs6787447	0.87[ASN][1000 genomes]
rs6790805	0.87[ASN][1000 genomes]
rs6796168	1.00[ASN][1000 genomes]
rs6801664	0.87[ASN][1000 genomes]
rs6805976	0.87[ASN][1000 genomes]
rs73017340	0.87[ASN][1000 genomes]
rs73026933	0.90[ASN][1000 genomes]
rs73026967	0.87[ASN][1000 genomes]
rs73026968	0.87[ASN][1000 genomes]
rs73026983	0.87[ASN][1000 genomes]
rs73026987	0.87[ASN][1000 genomes]
rs73026989	0.87[ASN][1000 genomes]
rs734915	0.84[ASN][1000 genomes]
rs73878309	0.81[ASN][1000 genomes]
rs7615833	0.87[ASN][1000 genomes]
rs7615868	0.94[ASN][1000 genomes]
rs7624791	0.87[ASN][1000 genomes]
rs7626773	0.87[ASN][1000 genomes]
rs7627500	0.84[ASN][1000 genomes]
rs7634299	0.87[ASN][1000 genomes]
rs7651924	0.81[ASN][1000 genomes]
rs7652624	0.87[ASN][1000 genomes]
rs9290070	0.90[ASN][1000 genomes]
rs9290071	0.84[ASN][1000 genomes]
rs9682249	0.88[ASN][1000 genomes]
rs9682995	0.81[ASN][1000 genomes]
rs9810351	1.00[ASN][1000 genomes]
rs9812574	0.81[ASN][1000 genomes]
rs9818470	0.87[ASN][1000 genomes]
rs9818835	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9818992	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9819793	0.87[ASN][1000 genomes]
rs9822705	0.81[ASN][1000 genomes]
rs9822916	0.87[ASN][1000 genomes]
rs9823424	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9824535	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9824805	0.87[ASN][1000 genomes]
rs9826857	1.00[ASN][1000 genomes]
rs9830183	1.00[ASN][1000 genomes]
rs9833270	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9835530	0.81[ASN][1000 genomes]
rs9838945	0.87[ASN][1000 genomes]
rs9841871	0.90[ASN][1000 genomes]
rs9842290	0.87[ASN][1000 genomes]
rs9847842	0.87[ASN][1000 genomes]
rs9851699	0.81[ASN][1000 genomes]
rs9855112	0.94[ASN][1000 genomes]
rs9855572	0.81[ASN][1000 genomes]
rs9856742	0.87[ASN][1000 genomes]
rs9858907	1.00[ASN][1000 genomes]
rs9859641	0.87[ASN][1000 genomes]
rs9860980	0.81[ASN][1000 genomes]
rs9862867	0.87[ASN][1000 genomes]
rs9871753	0.90[ASN][1000 genomes]
rs9876077	0.87[ASN][1000 genomes]
rs9877309	0.87[ASN][1000 genomes]
rs9880536	0.84[ASN][1000 genomes]
rs9884100	0.81[ASN][1000 genomes]
rs9985364	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv963285	chr3:160848780-160856433	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160844600-160859000	Weak transcription	Left Ventricle	heart
2	chr3:160850400-160882400	Weak transcription	Ovary	ovary
3	chr3:160855600-160861400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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