Variant report

Variant	rs12485519
Chromosome Location	chr11:85114121-85114122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85113435..85115119-chr20:58514869..58516491,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132825	Chromatin interaction
ENSG00000196227	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12486069	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12486103	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12489125	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12493266	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12496235	0.84[ASN][1000 genomes]
rs12496837	0.90[AMR][1000 genomes]
rs16831799	1.00[ASN][1000 genomes]
rs16831850	0.84[ASN][1000 genomes]
rs16831864	0.84[ASN][1000 genomes]
rs16831882	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16831942	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28704960	0.84[ASN][1000 genomes]
rs3925722	0.90[ASN][1000 genomes]
rs56807417	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59593286	0.97[ASN][1000 genomes]
rs59776766	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59867530	0.80[AMR][1000 genomes]
rs60121330	0.84[ASN][1000 genomes]
rs6441350	0.84[ASN][1000 genomes]
rs6771581	0.97[ASN][1000 genomes]
rs6790705	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6796168	0.84[ASN][1000 genomes]
rs73019384	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs734915	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7627500	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7639529	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9682249	0.97[ASN][1000 genomes]
rs9682995	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9810351	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9818835	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9818992	0.90[AMR][1000 genomes]
rs9823424	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9824535	0.84[ASN][1000 genomes]
rs9826857	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9830183	0.84[ASN][1000 genomes]
rs9858907	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv898045	chr11:85094601-85168570	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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