Variant report

Variant	rs9682249
Chromosome Location	chr3:160758733-160758734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10513561	0.84[AMR][1000 genomes]
rs12485519	0.97[ASN][1000 genomes]
rs12486069	0.88[ASN][1000 genomes]
rs12486103	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12487156	0.84[AMR][1000 genomes]
rs12489004	0.85[AMR][1000 genomes]
rs12489125	0.88[ASN][1000 genomes]
rs12493266	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12496235	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12496837	0.82[AMR][1000 genomes]
rs13315320	0.85[AMR][1000 genomes]
rs13319771	0.85[AMR][1000 genomes]
rs16831599	1.00[EUR][1000 genomes]
rs16831620	1.00[EUR][1000 genomes]
rs16831799	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16831850	0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16831864	0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16831882	0.88[ASN][1000 genomes]
rs16831942	0.88[ASN][1000 genomes]
rs1947146	1.00[EUR][1000 genomes]
rs28451189	0.85[AMR][1000 genomes]
rs28704960	0.88[ASN][1000 genomes]
rs28713364	0.83[AMR][1000 genomes]
rs3925722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4296611	0.85[AMR][1000 genomes]
rs4352387	0.85[AMR][1000 genomes]
rs4468992	0.85[AMR][1000 genomes]
rs4580574	0.85[AMR][1000 genomes]
rs4635725	0.85[AMR][1000 genomes]
rs55792556	1.00[EUR][1000 genomes]
rs55963912	1.00[EUR][1000 genomes]
rs56807417	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58693796	1.00[EUR][1000 genomes]
rs59567999	0.85[AMR][1000 genomes]
rs59593286	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59776766	0.88[ASN][1000 genomes]
rs60030122	1.00[EUR][1000 genomes]
rs60121330	0.88[ASN][1000 genomes]
rs61136727	1.00[EUR][1000 genomes]
rs6441350	0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6441363	0.85[AMR][1000 genomes]
rs6441365	0.85[AMR][1000 genomes]
rs6762064	0.85[AMR][1000 genomes]
rs6771581	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774919	0.85[AMR][1000 genomes]
rs6775446	0.85[AMR][1000 genomes]
rs6775931	0.85[AMR][1000 genomes]
rs6782415	0.85[AMR][1000 genomes]
rs6782518	0.85[AMR][1000 genomes]
rs6785714	0.85[AMR][1000 genomes]
rs6787447	0.85[AMR][1000 genomes]
rs6788738	0.83[AMR][1000 genomes]
rs6790705	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6796168	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6801664	0.85[AMR][1000 genomes]
rs6805976	0.85[AMR][1000 genomes]
rs6806729	1.00[EUR][1000 genomes]
rs73019384	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73026967	0.85[AMR][1000 genomes]
rs73026968	0.85[AMR][1000 genomes]
rs73026983	0.85[AMR][1000 genomes]
rs73026987	0.85[AMR][1000 genomes]
rs73026989	0.85[AMR][1000 genomes]
rs734915	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73875408	1.00[EUR][1000 genomes]
rs73875427	1.00[EUR][1000 genomes]
rs73875428	1.00[EUR][1000 genomes]
rs7615833	0.85[AMR][1000 genomes]
rs7615868	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7627500	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7634299	0.85[AMR][1000 genomes]
rs7639529	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9290070	0.85[AMR][1000 genomes]
rs9290071	0.85[AMR][1000 genomes]
rs9682995	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9810351	0.88[ASN][1000 genomes]
rs9818835	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9818992	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9819793	0.85[AMR][1000 genomes]
rs9822916	0.85[AMR][1000 genomes]
rs9823424	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9824535	0.88[ASN][1000 genomes]
rs9824805	0.85[AMR][1000 genomes]
rs9826857	0.88[ASN][1000 genomes]
rs9830183	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9834806	0.85[AMR][1000 genomes]
rs9841871	0.85[AMR][1000 genomes]
rs9847842	0.85[AMR][1000 genomes]
rs9855112	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9856742	0.85[AMR][1000 genomes]
rs9858907	0.88[ASN][1000 genomes]
rs9859641	0.85[AMR][1000 genomes]
rs9871753	0.85[AMR][1000 genomes]
rs9877309	0.85[AMR][1000 genomes]
rs9884100	0.85[AMR][1000 genomes]
rs9985364	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160745200-160782600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:160749800-160759000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:160753800-160763200	Weak transcription	Primary T cells from cord blood	blood
4	chr3:160754200-160760000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:160757000-160760000	Weak transcription	NH-A	brain
6	chr3:160757200-160759600	Weak transcription	Osteobl	bone
7	chr3:160758000-160759800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:160758600-160759200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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