Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12486103	1.00[EUR][1000 genomes]
rs12493266	1.00[EUR][1000 genomes]
rs16831599	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16831620	1.00[EUR][1000 genomes]
rs16831799	1.00[EUR][1000 genomes]
rs3925722	1.00[EUR][1000 genomes]
rs55792556	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55963912	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56807417	1.00[EUR][1000 genomes]
rs58693796	1.00[EUR][1000 genomes]
rs59593286	1.00[EUR][1000 genomes]
rs60030122	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61136727	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6771581	1.00[EUR][1000 genomes]
rs6790705	1.00[EUR][1000 genomes]
rs6796168	0.81[ASW][hapmap]
rs6806729	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73019384	1.00[EUR][1000 genomes]
rs734915	1.00[EUR][1000 genomes]
rs73875408	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875423	0.81[AFR][1000 genomes]
rs73875427	1.00[EUR][1000 genomes]
rs73875428	1.00[EUR][1000 genomes]
rs7627500	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7639529	1.00[EUR][1000 genomes]
rs9682249	1.00[EUR][1000 genomes]
rs9682995	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv32963	chr3:160555238-160603116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160589000-160596000	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:160594600-160596200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr3:160595600-160596400	ZNF genes & repeats	Aorta	Aorta
4	chr3:160595600-160600000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:160595600-160602000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:160595800-160596200	Weak transcription	Brain Hippocampus Middle	brain

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