Variant report

Variant	rs9682995
Chromosome Location	chr3:160719872-160719873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10513561	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12485519	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12486069	0.81[ASN][1000 genomes]
rs12486103	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12487156	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12489125	0.81[ASN][1000 genomes]
rs12493266	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12496235	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16831599	1.00[EUR][1000 genomes]
rs16831620	1.00[EUR][1000 genomes]
rs16831799	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16831850	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16831864	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16831882	0.81[ASN][1000 genomes]
rs16831942	0.81[ASN][1000 genomes]
rs1947146	1.00[EUR][1000 genomes]
rs28704960	0.81[ASN][1000 genomes]
rs3925722	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55792556	1.00[EUR][1000 genomes]
rs55963912	1.00[EUR][1000 genomes]
rs56807417	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58693796	1.00[EUR][1000 genomes]
rs59593286	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59776766	0.81[ASN][1000 genomes]
rs60030122	1.00[EUR][1000 genomes]
rs60121330	0.81[ASN][1000 genomes]
rs61136727	1.00[EUR][1000 genomes]
rs6441350	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6771581	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6790705	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6796168	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6806729	1.00[EUR][1000 genomes]
rs73019384	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs734915	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73875408	1.00[EUR][1000 genomes]
rs73875427	1.00[EUR][1000 genomes]
rs73875428	1.00[EUR][1000 genomes]
rs7615868	0.82[AMR][1000 genomes]
rs7627500	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7639529	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9682249	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9810351	0.81[ASN][1000 genomes]
rs9818835	0.81[ASN][1000 genomes]
rs9823424	0.81[ASN][1000 genomes]
rs9824535	0.81[ASN][1000 genomes]
rs9826857	0.81[ASN][1000 genomes]
rs9830183	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9855112	0.82[AMR][1000 genomes]
rs9858907	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160705000-160720000	Weak transcription	Gastric	stomach

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