Variant report

Variant	rs16831799
Chromosome Location	chr3:160749973-160749974
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160748979..160751725-chr3:160821249..160823513,2	MCF-7	breast:
2	chr3:160749654..160751759-chr3:160753566..160755069,2	MCF-7	breast:
3	chr3:160746924..160750622-chr3:160787755..160791172,3	MCF-7	breast:
4	chr3:160717602..160719198-chr3:160748866..160750938,2	MCF-7	breast:
5	chr3:160748438..160750159-chr3:160785119..160786787,2	MCF-7	breast:
6	chr3:160747461..160750414-chr3:161128370..161130411,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169255	Chromatin interaction
ENSG00000169251	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10513557	0.82[CHB][hapmap]
rs10513561	1.00[JPT][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10513562	0.91[JPT][hapmap]
rs12485519	1.00[ASN][1000 genomes]
rs12486069	0.84[ASN][1000 genomes]
rs12486103	0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12487156	1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12488403	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12489004	0.85[AMR][1000 genomes]
rs12489125	0.84[ASN][1000 genomes]
rs12493266	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496235	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12496837	0.82[AMR][1000 genomes]
rs13319771	0.85[AMR][1000 genomes]
rs1447612	0.82[CHB][hapmap]
rs1447613	0.82[CHB][hapmap]
rs16831546	0.82[CHB][hapmap]
rs16831549	0.82[CHB][hapmap]
rs16831552	0.82[CHB][hapmap]
rs16831555	0.82[CHB][hapmap]
rs16831581	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs16831599	1.00[EUR][1000 genomes]
rs16831611	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16831620	1.00[EUR][1000 genomes]
rs16831850	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16831864	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16831882	0.84[ASN][1000 genomes]
rs16831942	0.84[ASN][1000 genomes]
rs1947146	1.00[EUR][1000 genomes]
rs28704960	0.84[ASN][1000 genomes]
rs28713364	0.83[AMR][1000 genomes]
rs3925722	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4296611	0.85[AMR][1000 genomes]
rs4352387	0.85[AMR][1000 genomes]
rs4580574	0.85[AMR][1000 genomes]
rs4635725	0.85[AMR][1000 genomes]
rs55792556	1.00[EUR][1000 genomes]
rs55963912	1.00[EUR][1000 genomes]
rs56807417	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58693796	1.00[EUR][1000 genomes]
rs59567999	0.85[AMR][1000 genomes]
rs59593286	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59776766	0.84[ASN][1000 genomes]
rs60030122	1.00[EUR][1000 genomes]
rs60121330	0.84[ASN][1000 genomes]
rs61136727	1.00[EUR][1000 genomes]
rs6441350	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6441363	0.85[AMR][1000 genomes]
rs6441365	0.85[AMR][1000 genomes]
rs6762064	0.85[AMR][1000 genomes]
rs6771581	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6774919	0.85[AMR][1000 genomes]
rs6775446	0.85[AMR][1000 genomes]
rs6775931	0.85[AMR][1000 genomes]
rs6782415	0.85[AMR][1000 genomes]
rs6782518	0.85[AMR][1000 genomes]
rs6785714	0.85[AMR][1000 genomes]
rs6787447	0.85[AMR][1000 genomes]
rs6787599	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6788738	0.83[AMR][1000 genomes]
rs6790705	0.82[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6796168	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6801664	0.85[AMR][1000 genomes]
rs6805976	0.85[AMR][1000 genomes]
rs6806054	0.91[JPT][hapmap]
rs6806729	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6807796	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs73019384	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73026967	0.85[AMR][1000 genomes]
rs73026968	0.85[AMR][1000 genomes]
rs73026983	0.85[AMR][1000 genomes]
rs73026987	0.85[AMR][1000 genomes]
rs73026989	0.85[AMR][1000 genomes]
rs734915	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875408	1.00[EUR][1000 genomes]
rs73875427	1.00[EUR][1000 genomes]
rs73875428	1.00[EUR][1000 genomes]
rs7615868	1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs7627500	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632423	0.90[JPT][hapmap]
rs7634299	0.85[AMR][1000 genomes]
rs7639529	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs778653	0.90[JPT][hapmap]
rs778657	0.80[JPT][hapmap]
rs9290070	0.85[AMR][1000 genomes]
rs9290071	0.85[AMR][1000 genomes]
rs935499	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs9682249	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9682995	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9810351	0.84[ASN][1000 genomes]
rs9811594	0.90[JPT][hapmap]
rs9818835	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9818992	1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes]
rs9819793	0.85[AMR][1000 genomes]
rs9822916	0.85[AMR][1000 genomes]
rs9823424	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9824535	0.84[ASN][1000 genomes]
rs9824805	0.85[AMR][1000 genomes]
rs9826857	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs9830183	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9834806	0.85[AMR][1000 genomes]
rs9841871	0.85[AMR][1000 genomes]
rs9847842	0.85[AMR][1000 genomes]
rs9855112	0.88[AMR][1000 genomes]
rs9856742	0.85[AMR][1000 genomes]
rs9858907	0.84[ASN][1000 genomes]
rs9859641	0.85[AMR][1000 genomes]
rs9871753	0.85[AMR][1000 genomes]
rs9875200	0.91[JPT][hapmap]
rs9877309	0.85[AMR][1000 genomes]
rs9884100	0.85[AMR][1000 genomes]
rs9985364	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv965126	chr3:160748670-160750148	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160745200-160782600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:160749400-160753200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:160749800-160759000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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