Variant report

Variant	rs9834806
Chromosome Location	chr3:160892973-160892974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160864038..160866583-chr3:160891018..160893791,2	MCF-7	breast:
2	chr3:160892333..160895194-chr3:160896982..160899442,2	MCF-7	breast:
3	chr3:160809965..160812767-chr3:160891424..160893829,2	MCF-7	breast:
4	chr3:160891061..160893820-chr3:160896787..160898326,2	MCF-7	breast:

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs1017799	0.88[AMR][1000 genomes]
rs10513561	1.00[CEU][hapmap]
rs12487156	1.00[CEU][hapmap]
rs12489004	0.94[AMR][1000 genomes]
rs12489125	0.85[AMR][1000 genomes]
rs12494725	0.81[AMR][1000 genomes]
rs12496235	0.97[AMR][1000 genomes]
rs12634006	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs13315320	0.94[AMR][1000 genomes]
rs13319558	0.82[AMR][1000 genomes]
rs13319771	0.94[AMR][1000 genomes]
rs16831799	0.85[AMR][1000 genomes]
rs16831850	0.88[AMR][1000 genomes]
rs16831864	0.88[AMR][1000 genomes]
rs16831942	0.85[AMR][1000 genomes]
rs17392097	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2306209	0.82[AMR][1000 genomes]
rs28451189	0.94[AMR][1000 genomes]
rs28713364	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36015194	1.00[EUR][1000 genomes]
rs3925722	0.85[AMR][1000 genomes]
rs4296611	0.94[AMR][1000 genomes]
rs4352387	0.94[AMR][1000 genomes]
rs4468992	0.94[AMR][1000 genomes]
rs4580574	0.94[AMR][1000 genomes]
rs4635725	0.94[AMR][1000 genomes]
rs57278490	0.86[EUR][1000 genomes]
rs57496534	0.86[EUR][1000 genomes]
rs57655051	0.83[EUR][1000 genomes]
rs57803909	0.86[EUR][1000 genomes]
rs57903480	0.80[AMR][1000 genomes]
rs57916312	0.95[EUR][1000 genomes]
rs57974280	1.00[EUR][1000 genomes]
rs58350275	0.86[EUR][1000 genomes]
rs58562874	0.86[EUR][1000 genomes]
rs58878734	1.00[EUR][1000 genomes]
rs59371901	1.00[EUR][1000 genomes]
rs59567999	0.94[AMR][1000 genomes]
rs59593286	0.83[AMR][1000 genomes]
rs59761692	0.82[EUR][1000 genomes]
rs59867530	0.82[AMR][1000 genomes]
rs59964190	0.86[EUR][1000 genomes]
rs60612225	0.86[EUR][1000 genomes]
rs60684226	0.86[EUR][1000 genomes]
rs60866328	1.00[EUR][1000 genomes]
rs61217744	0.82[EUR][1000 genomes]
rs62282277	0.88[EUR][1000 genomes]
rs6441350	0.88[AMR][1000 genomes]
rs6441363	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441365	0.94[AMR][1000 genomes]
rs6441372	0.88[AMR][1000 genomes]
rs6441375	0.85[AMR][1000 genomes]
rs6762064	0.94[AMR][1000 genomes]
rs6771581	0.83[AMR][1000 genomes]
rs6774919	0.94[AMR][1000 genomes]
rs6775446	0.94[AMR][1000 genomes]
rs6775931	0.94[AMR][1000 genomes]
rs6778186	0.88[AMR][1000 genomes]
rs6782415	0.94[AMR][1000 genomes]
rs6782518	0.94[AMR][1000 genomes]
rs6785714	0.94[AMR][1000 genomes]
rs6787447	0.94[AMR][1000 genomes]
rs6788738	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6796168	0.85[AMR][1000 genomes]
rs6798468	1.00[EUR][1000 genomes]
rs6801664	0.94[AMR][1000 genomes]
rs6805976	0.94[AMR][1000 genomes]
rs73017340	0.88[AMR][1000 genomes]
rs73023224	1.00[EUR][1000 genomes]
rs73026933	0.81[AMR][1000 genomes]
rs73026967	0.94[AMR][1000 genomes]
rs73026968	0.94[AMR][1000 genomes]
rs73026983	0.94[AMR][1000 genomes]
rs73026987	0.94[AMR][1000 genomes]
rs73026989	0.94[AMR][1000 genomes]
rs73878307	0.82[EUR][1000 genomes]
rs73878308	0.82[EUR][1000 genomes]
rs73878309	0.82[AMR][1000 genomes]
rs73878311	0.82[EUR][1000 genomes]
rs7615833	0.94[AMR][1000 genomes]
rs7615868	0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7624791	0.88[AMR][1000 genomes]
rs7625217	0.86[EUR][1000 genomes]
rs7626773	0.88[AMR][1000 genomes]
rs7634299	0.94[AMR][1000 genomes]
rs7651924	0.85[AMR][1000 genomes]
rs7652624	0.88[AMR][1000 genomes]
rs873183	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs896080	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9290070	0.94[AMR][1000 genomes]
rs9290071	0.94[AMR][1000 genomes]
rs9682249	0.85[AMR][1000 genomes]
rs9812574	0.88[AMR][1000 genomes]
rs9818470	0.88[AMR][1000 genomes]
rs9819793	0.94[AMR][1000 genomes]
rs9822705	0.82[AMR][1000 genomes]
rs9822916	0.94[AMR][1000 genomes]
rs9824805	0.94[AMR][1000 genomes]
rs9830183	0.97[AMR][1000 genomes]
rs9833270	0.85[AMR][1000 genomes]
rs9835530	0.82[AMR][1000 genomes]
rs9838945	0.88[AMR][1000 genomes]
rs9841871	0.94[AMR][1000 genomes]
rs9842290	0.88[AMR][1000 genomes]
rs9847842	0.94[AMR][1000 genomes]
rs9855112	0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9855572	0.85[AMR][1000 genomes]
rs9856742	0.94[AMR][1000 genomes]
rs9859641	0.94[AMR][1000 genomes]
rs9860980	0.82[AMR][1000 genomes]
rs9862867	0.88[AMR][1000 genomes]
rs9871753	0.94[AMR][1000 genomes]
rs9876077	0.88[AMR][1000 genomes]
rs9877309	0.94[AMR][1000 genomes]
rs9880536	0.88[AMR][1000 genomes]
rs9884100	0.94[AMR][1000 genomes]
rs9985364	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160890200-160893000	Weak transcription	HUVEC	blood vessel

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