Variant report

Variant	rs62282277
Chromosome Location	chr3:160752997-160752998
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10513561	0.84[EUR][1000 genomes]
rs12487156	0.84[EUR][1000 genomes]
rs1345155	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17392097	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17826418	0.80[EUR][1000 genomes]
rs17826424	0.80[EUR][1000 genomes]
rs28713364	0.88[EUR][1000 genomes]
rs36015194	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57655051	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57916312	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57974280	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58739937	1.00[ASN][1000 genomes]
rs58878734	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371901	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60866328	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773813	0.84[EUR][1000 genomes]
rs6798468	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73023224	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9834806	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160745200-160782600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:160749400-160753200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:160749800-160759000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:160752200-160753000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr3:160752200-160755200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:160752200-160755200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr3:160752800-160753000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:160752800-160753000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:160752800-160753000	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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