Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160835167..160838027-chr3:160903594..160905386,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17392097	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28713364	1.00[EUR][1000 genomes]
rs36015194	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57278490	0.86[EUR][1000 genomes]
rs57496534	0.86[EUR][1000 genomes]
rs57655051	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57803909	0.86[EUR][1000 genomes]
rs57916312	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57974280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58350275	0.86[EUR][1000 genomes]
rs58562874	0.86[EUR][1000 genomes]
rs58739937	1.00[ASN][1000 genomes]
rs58878734	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59964190	0.86[EUR][1000 genomes]
rs60612225	0.86[EUR][1000 genomes]
rs60684226	0.86[EUR][1000 genomes]
rs60866328	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282277	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441358	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441363	0.91[EUR][1000 genomes]
rs6773951	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775897	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6778620	0.81[AFR][1000 genomes]
rs6788738	0.91[EUR][1000 genomes]
rs6798468	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73023224	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73023254	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7625217	0.86[EUR][1000 genomes]
rs9757598	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9834806	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv877704	chr3:160806859-160836006	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877705	chr3:160818188-160836006	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877707	chr3:160820175-160836006	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160835000-160836200	Enhancers	HUVEC	blood vessel

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