Variant report

Variant	rs58878734
Chromosome Location	chr3:160889020-160889021
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160814567..160815201-chr3:160889005..160890239,4	MCF-7	breast:
2	chr3:160887716..160889764-chr3:161129054..161131641,2	MCF-7	breast:
3	chr3:160815777..160819768-chr3:160885068..160889447,5	MCF-7	breast:
4	chr3:160825465..160827951-chr3:160887384..160889097,2	MCF-7	breast:
5	chr3:160821205..160823470-chr3:160886991..160889600,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169251	Chromatin interaction
ENSG00000169255	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12634006	0.82[EUR][1000 genomes]
rs17392097	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28713364	1.00[EUR][1000 genomes]
rs34759927	1.00[AMR][1000 genomes]
rs35590548	1.00[AMR][1000 genomes]
rs36015194	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57278490	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57496534	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57655051	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57803909	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57916312	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57974280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58350275	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58562874	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58739937	1.00[ASN][1000 genomes]
rs59371901	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59761692	0.82[EUR][1000 genomes]
rs59964190	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60612225	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60684226	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60866328	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61217744	0.82[EUR][1000 genomes]
rs62282277	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441363	0.91[EUR][1000 genomes]
rs6788738	0.91[EUR][1000 genomes]
rs6798468	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73023224	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73878307	0.82[EUR][1000 genomes]
rs73878308	0.82[EUR][1000 genomes]
rs73878311	0.82[EUR][1000 genomes]
rs7625217	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs873183	0.82[EUR][1000 genomes]
rs896080	0.82[EUR][1000 genomes]
rs9834806	1.00[EUR][1000 genomes]
rs9839335	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160886800-160889800	Weak transcription	Left Ventricle	heart
2	chr3:160888200-160889800	Enhancers	Osteobl	bone
3	chr3:160888200-160890200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:160888600-160889200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:160888600-160889600	Enhancers	Adipose Nuclei	Adipose
6	chr3:160888600-160889800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:160888600-160890000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:160888600-160890000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:160888600-160890000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:160888600-160890000	Enhancers	HSMMtube	muscle
11	chr3:160888600-160890000	Enhancers	NHDF-Ad	bronchial
12	chr3:160888600-160890200	Enhancers	HUVEC	blood vessel
13	chr3:160888800-160889200	Enhancers	Hela-S3	cervix
14	chr3:160888800-160889200	Enhancers	NH-A	brain
15	chr3:160888800-160889800	Enhancers	HMEC	breast
16	chr3:160889000-160889600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr3:160889000-160889600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr3:160889000-160890200	Enhancers	Ovary	ovary

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