Variant report
| Variant | rs73023224 |
|---|---|
| Chromosome Location | chr3:160852111-160852112 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:160838900..160841053-chr3:160850785..160853337,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs17392097 | 0.83[EUR][1000 genomes] |
| rs28713364 | 1.00[EUR][1000 genomes] |
| rs36015194 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs57278490 | 0.86[EUR][1000 genomes] |
| rs57496534 | 0.86[EUR][1000 genomes] |
| rs57655051 | 0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs57803909 | 0.86[EUR][1000 genomes] |
| rs57916312 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs57974280 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs58350275 | 0.86[EUR][1000 genomes] |
| rs58562874 | 0.86[EUR][1000 genomes] |
| rs58739937 | 0.87[ASN][1000 genomes] |
| rs58878734 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs59371901 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs59761692 | 0.82[EUR][1000 genomes] |
| rs59964190 | 0.86[EUR][1000 genomes] |
| rs60612225 | 0.86[EUR][1000 genomes] |
| rs60684226 | 0.86[EUR][1000 genomes] |
| rs60866328 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs61217744 | 0.82[EUR][1000 genomes] |
| rs62282277 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6441358 | 1.00[AMR][1000 genomes] |
| rs6441363 | 0.91[EUR][1000 genomes] |
| rs6773951 | 1.00[AMR][1000 genomes] |
| rs6775897 | 1.00[AMR][1000 genomes] |
| rs6778620 | 0.81[AFR][1000 genomes] |
| rs6788738 | 0.91[EUR][1000 genomes] |
| rs6798468 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs73023254 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73878307 | 0.82[EUR][1000 genomes] |
| rs7625217 | 0.86[EUR][1000 genomes] |
| rs873183 | 0.82[EUR][1000 genomes] |
| rs896080 | 0.82[EUR][1000 genomes] |
| rs9757598 | 1.00[AMR][1000 genomes] |
| rs9834806 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931072 | chr3:160669567-161159779 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 98 gene(s) | inside rSNPs | diseases |
| 2 | nsv963285 | chr3:160848780-160856433 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:160844600-160859000 | Weak transcription | Left Ventricle | heart |
| 2 | chr3:160850400-160882400 | Weak transcription | Ovary | ovary |
