Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160827858..160830677-chr3:160937623..160940393,2	K562	blood:
2	chr3:160823684..160825879-chr3:160830015..160833205,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169251	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17392097	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28713364	1.00[EUR][1000 genomes]
rs36015194	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57278490	0.86[EUR][1000 genomes]
rs57496534	0.86[EUR][1000 genomes]
rs57655051	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57803909	0.86[EUR][1000 genomes]
rs57916312	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57974280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58350275	0.86[EUR][1000 genomes]
rs58562874	0.86[EUR][1000 genomes]
rs58739937	1.00[ASN][1000 genomes]
rs58878734	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371901	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59964190	0.86[EUR][1000 genomes]
rs60612225	0.86[EUR][1000 genomes]
rs60684226	0.86[EUR][1000 genomes]
rs60866328	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282277	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441358	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441363	0.91[EUR][1000 genomes]
rs6773951	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6788738	0.91[EUR][1000 genomes]
rs73023224	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73023254	1.00[AMR][1000 genomes]
rs7625217	0.86[EUR][1000 genomes]
rs7650705	0.90[AFR][1000 genomes]
rs9757598	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9834806	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv877704	chr3:160806859-160836006	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877705	chr3:160818188-160836006	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877707	chr3:160820175-160836006	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160823200-160832800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:160824200-160830800	Weak transcription	Ovary	ovary
3	chr3:160826800-160834400	Weak transcription	Left Ventricle	heart

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