Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:160746924..160750622-chr3:160787755..160791172,3	MCF-7	breast:
2	chr3:160746769..160748964-chr3:160821024..160822898,2	MCF-7	breast:
3	chr3:160745725..160748261-chr3:160752866..160755134,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169251	Chromatin interaction
ENSG00000169255	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10513561	0.96[EUR][1000 genomes]
rs12374096	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12374192	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12487156	0.96[EUR][1000 genomes]
rs1345155	0.92[EUR][1000 genomes]
rs17236697	0.84[EUR][1000 genomes]
rs17236711	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17392097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17826388	0.84[EUR][1000 genomes]
rs17826412	0.84[EUR][1000 genomes]
rs17826418	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17826424	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28713364	0.83[EUR][1000 genomes]
rs36015194	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56741972	0.84[EUR][1000 genomes]
rs57916312	1.00[ASN][1000 genomes]
rs57974280	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58739937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58878734	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371901	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60811584	0.84[EUR][1000 genomes]
rs60866328	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282277	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773813	0.96[EUR][1000 genomes]
rs6798468	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73023224	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9834806	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160745200-160748800	Weak transcription	Placenta	Placenta
2	chr3:160745200-160782600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:160745600-160747600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:160746400-160747800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:160746600-160749000	Weak transcription	Psoas Muscle	Psoas

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