Variant report

Variant	rs57974280
Chromosome Location	chr3:160892954-160892955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160864038..160866583-chr3:160891018..160893791,2	MCF-7	breast:
2	chr3:160892333..160895194-chr3:160896982..160899442,2	MCF-7	breast:
3	chr3:160809965..160812767-chr3:160891424..160893829,2	MCF-7	breast:
4	chr3:160891061..160893820-chr3:160896787..160898326,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12634006	0.82[EUR][1000 genomes]
rs17392097	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28713364	1.00[EUR][1000 genomes]
rs34759927	1.00[AMR][1000 genomes]
rs35590548	1.00[AMR][1000 genomes]
rs36015194	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57278490	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57496534	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57655051	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57803909	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57916312	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58350275	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58562874	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58739937	1.00[ASN][1000 genomes]
rs58878734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371901	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59761692	0.82[EUR][1000 genomes]
rs59964190	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60612225	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60684226	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60866328	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61217744	0.82[EUR][1000 genomes]
rs62282277	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441363	0.91[EUR][1000 genomes]
rs6788738	0.91[EUR][1000 genomes]
rs6798468	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73023224	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73878307	0.82[EUR][1000 genomes]
rs73878308	0.82[EUR][1000 genomes]
rs73878311	0.82[EUR][1000 genomes]
rs7625217	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs873183	0.82[EUR][1000 genomes]
rs896080	0.82[EUR][1000 genomes]
rs9834806	1.00[EUR][1000 genomes]
rs9839335	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160890200-160893000	Weak transcription	HUVEC	blood vessel

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