Variant report

Variant	rs1345155
Chromosome Location	chr3:160653079-160653080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513561	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10513563	0.84[LWK][hapmap]
rs12374096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374192	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487156	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17236697	0.92[EUR][1000 genomes]
rs17236711	1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17392097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs17826388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17826412	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17826418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17826424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56741972	0.92[EUR][1000 genomes]
rs57655051	0.92[EUR][1000 genomes]
rs60811584	0.92[EUR][1000 genomes]
rs62282277	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6766368	1.00[TSI][hapmap]
rs6773813	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160644800-160654400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:160648000-160653200	Weak transcription	Adipose Nuclei	Adipose
3	chr3:160651000-160653400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:160652400-160653800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:160652800-160654000	Enhancers	Placenta	Placenta
6	chr3:160653000-160653800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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