Variant report

Variant	rs73023254
Chromosome Location	chr3:160885752-160885753
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4393924	0.83[AFR][1000 genomes]
rs59371901	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441358	1.00[AMR][1000 genomes]
rs6773951	1.00[AMR][1000 genomes]
rs6775897	1.00[AMR][1000 genomes]
rs6778620	0.91[AFR][1000 genomes]
rs6798468	1.00[AMR][1000 genomes]
rs73023224	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9757598	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160881000-160886400	Weak transcription	Fetal Heart	heart
2	chr3:160883200-160888600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:160883200-160889000	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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