Variant report
Variant | rs6771581 |
---|---|
Chromosome Location | chr3:160759207-160759208 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:160739787..160741430-chr3:160758858..160761533,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10513561 | 0.84[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs12485519 | 0.97[ASN][1000 genomes] |
rs12486069 | 0.88[ASN][1000 genomes] |
rs12486103 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12487156 | 0.81[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs12489004 | 0.83[AMR][1000 genomes] |
rs12489125 | 0.88[ASN][1000 genomes] |
rs12493266 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12496235 | 0.86[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs13315320 | 0.83[AMR][1000 genomes] |
rs13319771 | 0.83[AMR][1000 genomes] |
rs16831599 | 1.00[EUR][1000 genomes] |
rs16831620 | 1.00[EUR][1000 genomes] |
rs16831799 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs16831850 | 0.94[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs16831864 | 0.94[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs16831882 | 0.88[ASN][1000 genomes] |
rs16831942 | 0.88[ASN][1000 genomes] |
rs1947146 | 1.00[EUR][1000 genomes] |
rs28451189 | 0.83[AMR][1000 genomes] |
rs28704960 | 0.88[ASN][1000 genomes] |
rs28713364 | 0.80[AMR][1000 genomes] |
rs3925722 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4296611 | 0.83[AMR][1000 genomes] |
rs4352387 | 0.83[AMR][1000 genomes] |
rs4468992 | 0.83[AMR][1000 genomes] |
rs4580574 | 0.83[AMR][1000 genomes] |
rs4635725 | 0.83[AMR][1000 genomes] |
rs55792556 | 1.00[EUR][1000 genomes] |
rs55963912 | 1.00[EUR][1000 genomes] |
rs56807417 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs58693796 | 1.00[EUR][1000 genomes] |
rs59567999 | 0.83[AMR][1000 genomes] |
rs59593286 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59776766 | 0.88[ASN][1000 genomes] |
rs60030122 | 1.00[EUR][1000 genomes] |
rs60121330 | 0.88[ASN][1000 genomes] |
rs61136727 | 1.00[EUR][1000 genomes] |
rs6441350 | 0.94[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs6441363 | 0.83[AMR][1000 genomes] |
rs6441365 | 0.83[AMR][1000 genomes] |
rs6762064 | 0.83[AMR][1000 genomes] |
rs6774919 | 0.83[AMR][1000 genomes] |
rs6775446 | 0.83[AMR][1000 genomes] |
rs6775931 | 0.83[AMR][1000 genomes] |
rs6782415 | 0.83[AMR][1000 genomes] |
rs6782518 | 0.83[AMR][1000 genomes] |
rs6785714 | 0.83[AMR][1000 genomes] |
rs6787447 | 0.83[AMR][1000 genomes] |
rs6788738 | 0.80[AMR][1000 genomes] |
rs6790705 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6796168 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs6801664 | 0.83[AMR][1000 genomes] |
rs6805976 | 0.83[AMR][1000 genomes] |
rs6806729 | 1.00[EUR][1000 genomes] |
rs73019384 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs73026967 | 0.83[AMR][1000 genomes] |
rs73026968 | 0.83[AMR][1000 genomes] |
rs73026983 | 0.83[AMR][1000 genomes] |
rs73026987 | 0.83[AMR][1000 genomes] |
rs73026989 | 0.83[AMR][1000 genomes] |
rs734915 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs73875408 | 1.00[EUR][1000 genomes] |
rs73875427 | 1.00[EUR][1000 genomes] |
rs73875428 | 1.00[EUR][1000 genomes] |
rs7615833 | 0.83[AMR][1000 genomes] |
rs7615868 | 0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs7627500 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7634299 | 0.83[AMR][1000 genomes] |
rs7639529 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9290070 | 0.83[AMR][1000 genomes] |
rs9290071 | 0.83[AMR][1000 genomes] |
rs9682249 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9682995 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9810351 | 0.88[ASN][1000 genomes] |
rs9818835 | 0.88[ASN][1000 genomes] |
rs9818992 | 0.82[ASN][1000 genomes] |
rs9819793 | 0.83[AMR][1000 genomes] |
rs9822916 | 0.83[AMR][1000 genomes] |
rs9823424 | 0.88[ASN][1000 genomes] |
rs9824535 | 0.88[ASN][1000 genomes] |
rs9824805 | 0.83[AMR][1000 genomes] |
rs9826857 | 0.88[ASN][1000 genomes] |
rs9830183 | 0.86[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs9834806 | 0.83[AMR][1000 genomes] |
rs9841871 | 0.83[AMR][1000 genomes] |
rs9847842 | 0.83[AMR][1000 genomes] |
rs9855112 | 0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs9856742 | 0.83[AMR][1000 genomes] |
rs9858907 | 0.88[ASN][1000 genomes] |
rs9859641 | 0.83[AMR][1000 genomes] |
rs9871753 | 0.83[AMR][1000 genomes] |
rs9877309 | 0.83[AMR][1000 genomes] |
rs9884100 | 0.83[AMR][1000 genomes] |
rs9985364 | 0.83[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv931072 | chr3:160669567-161159779 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 98 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:160745200-160782600 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
2 | chr3:160753800-160763200 | Weak transcription | Primary T cells from cord blood | blood |
3 | chr3:160754200-160760000 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
4 | chr3:160757000-160760000 | Weak transcription | NH-A | brain |
5 | chr3:160757200-160759600 | Weak transcription | Osteobl | bone |
6 | chr3:160758000-160759800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
7 | chr3:160759000-160760800 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
8 | chr3:160759200-160760600 | Enhancers | HepG2 | liver |