Variant report
| Variant | rs55792556 |
|---|---|
| Chromosome Location | chr3:160609479-160609480 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12486103 | 1.00[EUR][1000 genomes] |
| rs12493266 | 1.00[EUR][1000 genomes] |
| rs16831599 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16831620 | 1.00[EUR][1000 genomes] |
| rs16831799 | 1.00[EUR][1000 genomes] |
| rs1947146 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3925722 | 1.00[EUR][1000 genomes] |
| rs55963912 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56807417 | 1.00[EUR][1000 genomes] |
| rs58693796 | 1.00[EUR][1000 genomes] |
| rs59593286 | 1.00[EUR][1000 genomes] |
| rs60030122 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61136727 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6771581 | 1.00[EUR][1000 genomes] |
| rs6790705 | 1.00[EUR][1000 genomes] |
| rs6806729 | 1.00[EUR][1000 genomes] |
| rs73019384 | 1.00[EUR][1000 genomes] |
| rs734915 | 1.00[EUR][1000 genomes] |
| rs73875408 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73875423 | 0.83[AFR][1000 genomes] |
| rs73875427 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73875428 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7627500 | 1.00[EUR][1000 genomes] |
| rs7639529 | 1.00[EUR][1000 genomes] |
| rs9682249 | 1.00[EUR][1000 genomes] |
| rs9682995 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532666 | chr3:159777847-160703202 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 271 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009249 | chr3:160496237-160627378 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv536780 | chr3:160496237-160627378 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv3391648 | chr3:160602299-160620598 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:160604400-160616600 | Weak transcription | Psoas Muscle | Psoas |
