Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160532424..160534589-chr3:160584064..160586211,2	MCF-7	breast:
2	chr3:160584041..160586531-chr3:161100253..161101953,2	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12486103	1.00[EUR][1000 genomes]
rs12492000	0.83[AFR][1000 genomes]
rs12493266	1.00[EUR][1000 genomes]
rs16831599	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16831620	1.00[EUR][1000 genomes]
rs16831799	1.00[EUR][1000 genomes]
rs1947146	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3925722	1.00[EUR][1000 genomes]
rs55792556	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55963912	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56807417	1.00[EUR][1000 genomes]
rs58693796	1.00[EUR][1000 genomes]
rs59593286	1.00[EUR][1000 genomes]
rs60030122	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61136727	1.00[EUR][1000 genomes]
rs6771581	1.00[EUR][1000 genomes]
rs6790705	1.00[EUR][1000 genomes]
rs6806729	1.00[EUR][1000 genomes]
rs73019384	1.00[EUR][1000 genomes]
rs734915	1.00[EUR][1000 genomes]
rs73875427	1.00[EUR][1000 genomes]
rs73875428	1.00[EUR][1000 genomes]
rs7627500	1.00[EUR][1000 genomes]
rs7639529	1.00[EUR][1000 genomes]
rs9682249	1.00[EUR][1000 genomes]
rs9682995	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv32963	chr3:160555238-160603116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160569600-160587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:160578400-160584400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:160582400-160587600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:160582400-160587600	Weak transcription	Left Ventricle	heart
5	chr3:160582400-160587800	Weak transcription	Psoas Muscle	Psoas
6	chr3:160584000-160586400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:160584200-160587800	Weak transcription	Colon Smooth Muscle	Colon

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