Variant report

Variant	rs12492000
Chromosome Location	chr3:160582811-160582812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513557	0.84[EUR][1000 genomes]
rs12486691	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12488403	0.84[EUR][1000 genomes]
rs12492376	0.84[EUR][1000 genomes]
rs1447613	0.84[EUR][1000 genomes]
rs16831546	0.84[EUR][1000 genomes]
rs16831549	0.84[EUR][1000 genomes]
rs16831552	0.84[EUR][1000 genomes]
rs16831555	0.84[EUR][1000 genomes]
rs16831581	0.84[EUR][1000 genomes]
rs16831611	0.84[EUR][1000 genomes]
rs59252183	0.84[EUR][1000 genomes]
rs6441341	0.84[EUR][1000 genomes]
rs6787599	0.84[EUR][1000 genomes]
rs6800309	0.84[EUR][1000 genomes]
rs6807796	0.84[EUR][1000 genomes]
rs73875408	0.83[AFR][1000 genomes]
rs935499	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv32963	chr3:160555238-160603116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160569600-160587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:160578400-160584400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:160582400-160587600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:160582400-160587600	Weak transcription	Left Ventricle	heart
5	chr3:160582400-160587800	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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