Variant report

Variant	rs6787599
Chromosome Location	chr3:160613676-160613677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10513557	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10513561	1.00[JPT][hapmap]
rs10513562	0.81[JPT][hapmap]
rs10513563	0.85[CEU][hapmap]
rs12486103	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12486691	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12487156	1.00[JPT][hapmap]
rs12488403	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12492000	0.84[EUR][1000 genomes]
rs12492376	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12630250	1.00[CEU][hapmap]
rs1374792	0.85[CEU][hapmap]
rs1447612	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1447613	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16831546	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16831549	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16831552	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16831555	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16831581	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831611	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16831760	0.85[CEU][hapmap]
rs16831771	0.85[CEU][hapmap]
rs16831799	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs16831802	0.85[CEU][hapmap]
rs16831850	0.90[JPT][hapmap]
rs16831864	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs17405707	0.85[CEU][hapmap]
rs3925722	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs58693796	0.94[ASN][1000 genomes]
rs59252183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59647128	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441341	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441350	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6790705	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6796168	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6800309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806054	0.81[JPT][hapmap]
rs6806729	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6807796	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627500	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7632423	0.90[JPT][hapmap]
rs778653	0.90[JPT][hapmap]
rs778657	0.90[JPT][hapmap]
rs935499	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811594	0.90[JPT][hapmap]
rs9818992	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs9875200	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3391648	chr3:160602299-160620598	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160604400-160616600	Weak transcription	Psoas Muscle	Psoas
2	chr3:160611200-160615200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:160611200-160619400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:160611400-160615200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:160611600-160615400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:160611600-160615400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:160611600-160618600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:160612200-160614600	Weak transcription	Fetal Brain Female	brain
9	chr3:160612200-160615400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:160612200-160618800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:160612400-160615000	Weak transcription	Fetal Brain Male	brain
12	chr3:160613000-160615200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:160613000-160619000	Weak transcription	H1 Cell Line	embryonic stem cell

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