Variant report

Variant	rs59647128
Chromosome Location	chr3:160639837-160639838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10513557	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12488403	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12492376	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1447612	0.83[ASN][1000 genomes]
rs1447613	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16831546	0.83[EUR][1000 genomes]
rs16831549	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16831552	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16831555	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16831581	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16831611	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58693796	0.91[ASN][1000 genomes]
rs59252183	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441341	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6787599	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6800309	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6806729	0.91[ASN][1000 genomes]
rs6807796	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs935499	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160630200-160641400	Weak transcription	Psoas Muscle	Psoas
2	chr3:160635400-160644000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:160635400-160649200	Weak transcription	Fetal Brain Female	brain
4	chr3:160636000-160644000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:160638200-160641800	Weak transcription	Left Ventricle	heart
6	chr3:160638200-160647200	Weak transcription	Right Ventricle	heart
7	chr3:160638400-160643800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:160638400-160643800	Weak transcription	Right Atrium	heart
9	chr3:160639000-160644400	Weak transcription	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links