Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10513557	1.00[CEU][hapmap]
rs10513563	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12488403	1.00[CEU][hapmap]
rs12630250	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1374792	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1447613	1.00[CEU][hapmap]
rs16831546	1.00[CEU][hapmap]
rs16831549	1.00[CEU][hapmap]
rs16831552	1.00[CEU][hapmap]
rs16831555	1.00[CEU][hapmap]
rs16831581	1.00[CEU][hapmap]
rs16831611	1.00[CEU][hapmap]
rs16831771	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16831802	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17405707	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60768391	0.96[EUR][1000 genomes]
rs62278044	0.85[EUR][1000 genomes]
rs62278045	0.88[EUR][1000 genomes]
rs62278046	0.88[EUR][1000 genomes]
rs62280310	0.86[EUR][1000 genomes]
rs62280332	0.93[EUR][1000 genomes]
rs62280340	0.96[EUR][1000 genomes]
rs62282270	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62282271	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62282275	0.96[EUR][1000 genomes]
rs6767132	0.80[EUR][1000 genomes]
rs6787599	0.85[CEU][hapmap]
rs6807796	1.00[CEU][hapmap]
rs935499	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16831760	B3GALNT1	cis	Artery Tibial	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160732800-160745000	Weak transcription	Psoas Muscle	Psoas
2	chr3:160733600-160746000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:160740800-160745600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:160742200-160746000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:160742600-160744200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:160743800-160744200	Enhancers	Adipose Nuclei	Adipose
7	chr3:160743800-160744200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr3:160744000-160745200	Enhancers	Placenta	Placenta
9	chr3:160744000-160745600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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