Variant report

Variant	rs62280310
Chromosome Location	chr3:160668185-160668186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10513563	0.86[EUR][1000 genomes]
rs12630250	0.83[EUR][1000 genomes]
rs1374792	0.96[EUR][1000 genomes]
rs16831760	0.86[EUR][1000 genomes]
rs16831771	0.86[EUR][1000 genomes]
rs16831802	0.86[EUR][1000 genomes]
rs17405707	0.86[EUR][1000 genomes]
rs60768391	0.83[EUR][1000 genomes]
rs60968261	0.80[EUR][1000 genomes]
rs62280332	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62280340	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62282270	0.86[EUR][1000 genomes]
rs62282271	0.86[EUR][1000 genomes]
rs62282275	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62280310	B3GALNT1	cis	Artery Tibial	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160666200-160669000	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr3:160666400-160668200	Weak transcription	Gastric	stomach
3	chr3:160666400-160669400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:160666400-160669600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:160666400-160669600	Weak transcription	Left Ventricle	heart
6	chr3:160666400-160673400	Weak transcription	Right Atrium	heart
7	chr3:160666600-160668200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:160666800-160668200	Enhancers	Primary T cells from cord blood	blood
9	chr3:160666800-160668200	Weak transcription	Liver	Liver
10	chr3:160667000-160668200	Enhancers	Dnd41	blood
11	chr3:160667400-160668600	Enhancers	Pancreas	Pancrea
12	chr3:160667400-160669200	Weak transcription	Fetal Kidney	kidney
13	chr3:160667400-160696000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:160668000-160668600	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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