Variant report

Variant	rs62280340
Chromosome Location	chr3:160714090-160714091
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10513563	0.96[EUR][1000 genomes]
rs12630250	0.93[EUR][1000 genomes]
rs1374792	0.86[EUR][1000 genomes]
rs16831760	0.96[EUR][1000 genomes]
rs16831771	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16831802	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17405707	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60768391	0.93[EUR][1000 genomes]
rs62278044	0.82[EUR][1000 genomes]
rs62278045	0.85[EUR][1000 genomes]
rs62278046	0.85[EUR][1000 genomes]
rs62280310	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62280332	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62282270	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62282271	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62282275	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1007004	chr3:160695108-160718154	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160705000-160720000	Weak transcription	Gastric	stomach
2	chr3:160706400-160716000	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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