Variant report

Variant	rs62282271
Chromosome Location	chr3:160732139-160732140
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10513563	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12630250	0.96[EUR][1000 genomes]
rs1374792	0.82[EUR][1000 genomes]
rs16831760	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16831771	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16831802	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17405707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60768391	0.96[EUR][1000 genomes]
rs62278044	0.85[EUR][1000 genomes]
rs62278045	0.88[EUR][1000 genomes]
rs62278046	0.88[EUR][1000 genomes]
rs62280310	0.86[EUR][1000 genomes]
rs62280332	0.93[EUR][1000 genomes]
rs62280340	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62282270	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62282275	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6767132	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62282271	B3GALNT1	cis	Artery Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160726400-160732600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:160732000-160734200	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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