Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160749654..160751759-chr3:160753566..160755069,2	MCF-7	breast:
2	chr3:160745725..160748261-chr3:160752866..160755134,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10513557	1.00[CEU][hapmap]
rs10513563	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11705811	0.92[JPT][hapmap]
rs12488403	1.00[CEU][hapmap]
rs1374792	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs1447613	1.00[CEU][hapmap]
rs16831546	1.00[CEU][hapmap]
rs16831549	1.00[CEU][hapmap]
rs16831552	1.00[CEU][hapmap]
rs16831555	1.00[CEU][hapmap]
rs16831581	1.00[CEU][hapmap]
rs16831611	1.00[CEU][hapmap]
rs16831760	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16831771	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16831802	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16831830	0.92[JPT][hapmap];0.85[AMR][1000 genomes]
rs17405707	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs60768391	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62278044	0.82[EUR][1000 genomes]
rs62278045	0.85[EUR][1000 genomes]
rs62278046	0.85[EUR][1000 genomes]
rs62280310	0.83[EUR][1000 genomes]
rs62280332	0.89[EUR][1000 genomes]
rs62280340	0.93[EUR][1000 genomes]
rs62282270	0.96[EUR][1000 genomes]
rs62282271	0.96[EUR][1000 genomes]
rs62282275	0.93[EUR][1000 genomes]
rs6767132	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6787599	1.00[CEU][hapmap]
rs6797798	0.83[JPT][hapmap]
rs6807796	1.00[CEU][hapmap]
rs881453	0.85[AMR][1000 genomes]
rs935499	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv979791	chr3:160753362-160754754	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160745200-160782600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:160749800-160759000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:160752200-160755200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:160752200-160755200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:160753000-160755000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:160753800-160755000	Enhancers	Primary B cells from cord blood	blood
7	chr3:160753800-160755200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:160753800-160763200	Weak transcription	Primary T cells from cord blood	blood
9	chr3:160754000-160755000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr3:160754000-160755200	Enhancers	Primary hematopoietic stem cells	blood
11	chr3:160754000-160755200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:160754200-160755200	Enhancers	HUVEC	blood vessel
13	chr3:160754200-160760000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:160754400-160756200	Weak transcription	Osteobl	bone
15	chr3:160754400-160756600	Weak transcription	NH-A	brain

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