Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160745725..160748261-chr3:160752866..160755134,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10513557	1.00[CEU][hapmap]
rs10513563	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12488403	1.00[CEU][hapmap]
rs12630250	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1374792	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1447613	1.00[CEU][hapmap]
rs16831546	1.00[CEU][hapmap]
rs16831549	1.00[CEU][hapmap]
rs16831552	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs16831555	1.00[CEU][hapmap]
rs16831581	1.00[CEU][hapmap]
rs16831611	1.00[CEU][hapmap]
rs16831760	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16831802	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17405707	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60768391	0.96[EUR][1000 genomes]
rs62278044	0.85[EUR][1000 genomes]
rs62278045	0.88[EUR][1000 genomes]
rs62278046	0.88[EUR][1000 genomes]
rs62280310	0.86[EUR][1000 genomes]
rs62280332	0.93[EUR][1000 genomes]
rs62280340	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62282270	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62282271	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62282275	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6767132	0.80[EUR][1000 genomes]
rs6787599	0.85[CEU][hapmap]
rs6807796	1.00[CEU][hapmap]
rs935499	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16831771	B3GALNT1	cis	Artery Tibial	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160745000-160746600	Enhancers	Psoas Muscle	Psoas
2	chr3:160745200-160748800	Weak transcription	Placenta	Placenta
3	chr3:160745200-160782600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:160745600-160746400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:160745600-160747600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:160745800-160746800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:160746000-160746800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:160746000-160746800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:160746200-160746600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr3:160746200-160746800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr3:160746200-160746800	Enhancers	HUES48 Cell Line	embryonic stem cell

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